PDB Chemical Component 7NH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7NH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.344 1.323
N1 C6 1.330 1.317
C2 C3 1.399 1.378
C2 H2 1.080 1.081
C3 C4 1.348 1.393
C3 H3 1.080 1.079
C4 C5 1.337 1.412
C4 N3 1.320 1.372
C5 C6 1.375 1.395
C5 CN4 1.339 1.461
C6 H6 1.080 1.080
N3 C8 1.324 1.376
N3 HN3 0.999 0.970
CN4 C8 1.379 1.357
CN4 HN4 1.080 1.080
C8 C1' 1.376 1.479
C1' C2' 1.394 1.395
C1' C6' 1.396 1.399
C2' C3' 1.373 1.381
C2' H2' 1.080 1.080
C3' C4' 1.377 1.381
C3' H3' 1.080 1.080
C4' C5' 1.404 1.394
C4' H4' 1.080 1.080
C5' C6' 1.386 1.396
C5' C1B 1.382 1.483
C6' O6' 1.375 1.357
O6' H6' 0.950 0.967
C1B C2B 1.398 1.393
C1B C6B 1.396 1.394
C2B C3B 1.389 1.381
C2B H2B 1.080 1.079
C3B C4B 1.389 1.383
C3B H3B 1.080 1.080
C4B C5B 1.388 1.384
C4B H4B 1.080 1.079
C5B C6B 1.384 1.380
C5B C51 1.518 1.507
C6B H6B 1.080 1.080
C51 N52 1.490 1.464
C51 H511 1.100 1.090
C51 H512 1.100 1.090
N52 C53 1.305 1.347
N52 H52 1.001 0.970
C53 O53 1.212 1.216
C53 N54 1.305 1.348
N54 H541 1.000 0.970
N54 H542 1.000 0.970

Bond Angles for 7NH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 127.5 122.2
N1 C2 C3 116.8 121.6
N1 C2 H2 121.6 119.2
N1 C6 C5 114.4 120.1
N1 C6 H6 122.8 120.0
C3 C2 H2 121.6 119.2
C2 C3 C4 116.5 118.9
C2 C3 H3 121.8 120.6
C4 C3 H3 121.7 120.6
C3 C4 C5 124.0 118.1
C3 C4 N3 128.5 134.4
C5 C4 N3 107.5 107.5
C4 C5 C6 120.7 119.1
C4 C5 CN4 107.6 106.2
C4 N3 C8 111.7 109.9
C4 N3 HN3 124.2 125.1
C6 C5 CN4 131.7 134.7
C5 C6 H6 122.8 119.9
C5 CN4 C8 108.8 106.9
C5 CN4 HN4 125.6 126.5
C8 N3 HN3 124.2 125.1
N3 C8 CN4 104.5 109.6
N3 C8 C1' 121.9 125.2
C8 CN4 HN4 125.6 126.6
CN4 C8 C1' 133.6 125.2
C8 C1' C2' 118.5 120.1
C8 C1' C6' 123.4 120.1
C2' C1' C6' 118.1 119.8
C1' C2' C3' 121.5 120.1
C1' C2' H2' 119.3 119.9
C1' C6' C5' 122.0 119.6
C1' C6' O6' 119.1 120.2
C3' C2' H2' 119.3 119.9
C2' C3' C4' 119.2 120.4
C2' C3' H3' 120.4 119.8
C4' C3' H3' 120.4 119.8
C3' C4' C5' 121.8 120.2
C3' C4' H4' 119.1 119.9
C5' C4' H4' 119.1 119.9
C4' C5' C6' 117.4 119.8
C4' C5' C1B 119.2 120.1
C6' C5' C1B 123.3 120.1
C5' C6' O6' 118.9 120.2
C5' C1B C2B 121.6 120.1
C5' C1B C6B 120.6 120.1
C6' O6' H6' 109.5 106.8
C2B C1B C6B 117.8 119.8
C1B C2B C3B 121.5 119.9
C1B C2B H2B 119.3 120.1
C1B C6B C5B 121.4 119.9
C1B C6B H6B 119.3 120.0
C3B C2B H2B 119.2 120.0
C2B C3B C4B 119.2 120.2
C2B C3B H3B 120.4 119.9
C4B C3B H3B 120.4 119.9
C3B C4B C5B 120.4 120.2
C3B C4B H4B 119.8 119.9
C5B C4B H4B 119.8 119.9
C4B C5B C6B 119.7 120.1
C4B C5B C51 120.2 120.0
C6B C5B C51 120.1 119.9
C5B C6B H6B 119.3 120.1
C5B C51 N52 111.8 109.5
C5B C51 H511 108.2 109.4
C5B C51 H512 108.7 109.5
N52 C51 H511 108.1 109.5
N52 C51 H512 108.7 109.5
C51 N52 C53 121.4 120.0
C51 N52 H52 119.3 120.0
H511 C51 H512 111.4 109.4
C53 N52 H52 119.3 120.0
N52 C53 O53 123.2 120.0
N52 C53 N54 118.6 120.0
O53 C53 N54 118.2 119.9
C53 N54 H541 124.5 120.0
C53 N54 H542 111.1 120.0
H541 N54 H542 124.4 120.0

Torsion Angles for 7NH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 C5 0.0 0.0
C2 N1 C6 H6 180.1 180.0
C3 C2 N1 H2 180.0 180.0
N1 C2 C3 C4 0.1 360.0
N1 C2 C3 H3 180.1 180.0
C6 N1 C2 C3 360.0 0.0
C6 N1 C2 H2 179.9 180.0
C4 C5 C6 N1 359.9 360.0
N1 C6 C5 CN4 180.2 180.3
C5 C6 N1 H6 180.0 180.0
C3 C2 N1 C6 360.0 0.0
N1 C2 C3 H2 180.0 180.0
C4 C3 C2 H3 180.0 179.9
C2 C3 C4 C5 359.9 0.0
C2 C3 C4 N3 179.7 180.0
H2 C2 N1 C6 179.9 180.0
N1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 180.1 180.0
H2 C2 C3 H3 0.1 0.1
C4 C3 C2 H2 180.1 180.0
C2 C3 C4 H3 180.0 180.1
C5 C4 C3 N3 180.2 180.0
C3 C4 C5 C6 0.1 0.0
C3 C4 C5 CN4 179.9 179.8
C3 C4 N3 C8 180.3 180.0
C3 C4 N3 HN3 0.3 360.0
H3 C3 C2 H2 0.1 0.1
C2 C3 H3 C4 180.0 179.9
H3 C3 C4 C5 179.9 180.0
H3 C3 C4 N3 359.7 360.0
N1 C6 C5 C4 359.9 360.0
C5 C4 C3 H3 179.9 180.0
C3 C4 C5 N3 179.8 180.0
C5 C4 N3 C8 0.1 0.0
C5 C4 N3 HN3 180.1 180.0
C6 C5 C4 CN4 180.2 180.2
C4 C5 C6 H6 179.9 180.0
C4 C5 CN4 C8 359.8 0.4
C4 C5 CN4 HN4 179.8 180.3
N3 C4 C3 H3 359.7 360.0
C3 C4 N3 C5 180.2 180.0
N3 C4 C5 C6 180.3 180.0
N3 C4 C5 CN4 0.1 359.8
C8 N3 C4 HN3 180.0 180.1
C4 N3 C8 CN4 359.8 0.2
C4 N3 C8 C1' 178.6 180.0
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 N3 180.3 180.0
C4 C5 C6 CN4 179.7 179.7
C6 C5 CN4 C8 179.6 180.1
C6 C5 CN4 HN4 359.6 0.0
CN4 C5 C4 N3 0.1 359.8
C4 C5 CN4 C6 180.2 180.3
CN4 C5 C6 H6 0.2 0.3
N3 C8 CN4 C5 0.2 359.6
C8 CN4 C5 HN4 180.0 180.1
C5 CN4 C8 C1' 181.7 179.9
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 CN4 0.2 0.3
C4 N3 C8 HN3 180.0 179.9
C5 CN4 C8 N3 0.2 359.6
N3 C8 CN4 HN4 180.2 179.7
CN4 C8 N3 C1' 181.2 180.2
N3 C8 C1' C2' 184.9 320.0
N3 C8 C1' C6' 5.4 140.2
C4 N3 HN3 C8 180.0 180.1
HN3 N3 C8 CN4 179.8 180.3
HN3 N3 C8 C1' 358.6 0.1
C5 CN4 C8 HN4 180.0 179.9
CN4 C8 N3 HN3 179.8 180.3
N3 C8 CN4 C1' 178.6 179.8
CN4 C8 C1' C2' 3.3 139.7
CN4 C8 C1' C6' 183.7 320.0
C5 CN4 HN4 C8 180.0 180.1
HN4 CN4 C8 C1' 1.7 359.9
C1' C8 N3 HN3 358.6 0.1
N3 C8 C1' CN4 181.6 180.2
C1' C8 CN4 HN4 1.7 359.9
C2' C1' C8 C6' 179.5 179.7
C8 C1' C2' C3' 180.6 180.0
C8 C1' C2' H2' 0.6 360.0
C8 C1' C6' C5' 179.2 180.3
C8 C1' C6' O6' 357.9 359.7
C8 C1' C2' C6' 180.4 180.3
C2' C1' C6' C5' 359.6 0.5
C2' C1' C6' O6' 178.3 180.0
C3' C2' C1' H2' 180.0 180.0
C1' C2' C3' C4' 0.1 360.0
C1' C2' C3' H3' 180.1 180.0
C8 C1' C6' C2' 179.5 179.7
C6' C1' C2' C3' 0.1 359.8
C6' C1' C2' H2' 180.1 179.7
C4' C5' C6' C1' 0.4 359.4
C1' C6' C5' C1B 180.9 179.7
C5' C6' C1' O6' 181.3 180.6
C1' C6' O6' H6' 54.5 90.0
C3' C2' C1' C6' 0.1 359.8
C1' C2' C3' H2' 180.0 180.0
C4' C3' C2' H3' 180.0 180.0
C2' C3' C4' C5' 360.0 360.0
C2' C3' C4' H4' 180.0 180.0
H2' C2' C1' C6' 180.1 179.7
C1' C2' H2' C3' 180.0 180.0
H2' C2' C3' C4' 180.1 180.0
H2' C2' C3' H3' 0.1 0.0
C4' C3' C2' H2' 180.1 180.0
C2' C3' C4' H3' 180.0 180.0
C5' C4' C3' H4' 180.0 180.0
C3' C4' C5' C6' 359.8 0.3
C3' C4' C5' C1B 179.3 180.0
H3' C3' C2' H2' 0.1 0.0
C2' C3' H3' C4' 180.0 180.0
H3' C3' C4' C5' 180.0 179.9
H3' C3' C4' H4' 360.0 360.0
C1' C6' C5' C4' 0.4 359.4
C5' C4' C3' H3' 180.0 179.9
C3' C4' C5' H4' 180.0 180.0
C6' C5' C4' C1B 180.4 180.3
C4' C5' C6' O6' 181.7 180.0
C4' C5' C1B C2B 136.8 130.0
C4' C5' C1B C6B 318.3 310.3
H4' C4' C3' H3' 360.0 360.0
C3' C4' H4' C5' 180.0 180.0
H4' C4' C5' C6' 179.8 180.3
H4' C4' C5' C1B 359.3 360.0
C1' C6' C5' O6' 178.7 179.4
C6' C5' C4' H4' 179.8 180.3
C4' C5' C6' C1B 179.5 179.7
C6' C5' C1B C2B 316.3 309.7
C6' C5' C1B C6B 137.8 130.0
C5' C6' O6' H6' 233.2 269.5
C1B C5' C4' H4' 359.3 360.0
C4' C5' C1B C6' 180.5 180.3
C1B C5' C6' O6' 2.2 0.3
C2B C1B C5' C6B 178.5 179.7
C5' C1B C2B C3B 181.6 180.0
C5' C1B C2B H2B 1.7 360.0
C5' C1B C6B C5B 178.2 180.3
C5' C1B C6B H6B 358.2 359.7
C1' C6' O6' C5' 181.3 180.6
O6' C6' C5' C1B 2.2 0.3
C5' C1B C2B C6B 181.5 180.3
C2B C1B C6B C5B 359.6 0.6
C2B C1B C6B H6B 179.6 179.9
C3B C2B C1B H2B 180.0 180.0
C1B C2B C3B C4B 360.0 360.0
C1B C2B C3B H3B 180.0 180.0
C5' C1B C6B C2B 178.6 179.7
C6B C1B C2B C3B 0.2 359.7
C6B C1B C2B H2B 180.2 179.7
C4B C5B C6B C1B 0.4 359.4
C1B C6B C5B C51 181.4 179.7
C5B C6B C1B H6B 180.0 180.6
C3B C2B C1B C6B 0.2 359.7
C1B C2B C3B H2B 180.0 180.0
C4B C3B C2B H3B 180.0 180.0
C2B C3B C4B C5B 0.1 360.0
C2B C3B C4B H4B 180.0 180.1
H2B C2B C1B C6B 180.2 179.7
C1B C2B H2B C3B 180.0 180.0
H2B C2B C3B C4B 179.9 180.0
H2B C2B C3B H3B 359.9 360.0
C4B C3B C2B H2B 179.9 180.0
C2B C3B C4B H3B 180.0 180.0
C5B C4B C3B H4B 180.0 179.9
C3B C4B C5B C6B 359.8 0.3
C3B C4B C5B C51 178.7 180.0
H3B C3B C2B H2B 359.9 360.0
C2B C3B H3B C4B 180.0 180.0
H3B C3B C4B C5B 180.1 180.0
H3B C3B C4B H4B 0.0 0.1
C1B C6B C5B C4B 0.4 359.4
C5B C4B C3B H3B 180.1 180.0
C3B C4B C5B H4B 180.0 180.1
C6B C5B C4B C51 181.0 180.3
C4B C5B C6B H6B 180.4 180.0
C4B C5B C51 N52 138.8 90.0
C4B C5B C51 H511 19.8 330.0
C4B C5B C51 H512 258.8 210.1
H4B C4B C3B H3B 0.0 0.1
C3B C4B H4B C5B 180.0 179.9
H4B C4B C5B C6B 179.8 180.2
H4B C4B C5B C51 358.8 359.9
C1B C6B C5B H6B 180.0 179.4
C6B C5B C4B H4B 179.8 180.2
C4B C5B C6B C51 179.0 179.7
C6B C5B C51 N52 317.8 269.7
C6B C5B C51 H511 198.8 149.7
C6B C5B C51 H512 77.7 29.8
C51 C5B C4B H4B 358.8 359.9
C4B C5B C51 C6B 181.0 180.3
C51 C5B C6B H6B 1.4 0.3
N52 C51 C5B H511 119.0 120.0
N52 C51 C5B H512 240.0 239.9
C5B C51 N52 C53 111.7 180.0
C5B C51 N52 H52 291.7 0.1
H511 C51 C5B H512 121.0 119.9
C1B C6B H6B C5B 180.0 180.6
H6B C6B C5B C51 1.4 0.3
C5B C51 N52 H511 241.0 240.0
C5B C51 N52 H512 120.0 120.0
H511 C51 N52 H512 239.0 240.0
C53 N52 C51 H52 180.0 179.9
C51 N52 C53 O53 358.8 0.0
C51 N52 C53 N54 179.4 180.0
C5B C51 H511 N52 121.3 120.0
C5B C51 H511 H512 240.6 240.0
N52 C51 H511 H512 119.3 120.0
H511 C51 N52 C53 230.7 300.0
H511 C51 N52 H52 50.7 120.0
C5B C51 H512 N52 238.1 240.0
C5B C51 H512 H511 119.0 119.9
N52 C51 H512 H511 241.0 240.0
H512 C51 N52 C53 351.7 60.0
H512 C51 N52 H52 171.7 240.0
C53 N52 C51 H511 230.7 300.0
C53 N52 C51 H512 351.7 60.0
C51 N52 C53 H52 180.0 180.1
O53 C53 N52 N54 179.5 180.0
N52 C53 N54 H541 360.0 180.0
N52 C53 N54 H542 180.0 359.7
H52 N52 C51 H511 50.7 120.0
H52 N52 C51 H512 171.7 240.0
C51 N52 H52 C53 180.0 179.9
H52 N52 C53 O53 178.8 180.0
H52 N52 C53 N54 359.4 360.0
O53 C53 N52 H52 178.8 180.0
N52 C53 O53 N54 180.5 180.0
O53 C53 N54 H541 180.5 0.0
O53 C53 N54 H542 0.5 179.7
N54 C53 N52 H52 359.4 360.0
N52 C53 N54 O53 179.5 180.0
H541 N54 C53 H542 180.0 180.3
C53 N54 H541 H542 180.0 179.7
C53 N54 H542 H541 180.0 180.3