Atom Nomenclature for 7NH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7NH

Atom Name (V3) Atom Name (V2)
N1 N1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
N3 N3
CN4 CN4
C8 C8
C1' C1'
C2' C2'
C3' C3'
C4' C4'
C5' C5'
C6' C6'
O6' O6'
C1B C1''
C2B C2''
C3B C3''
C4B C4''
C5B C5''
C6B C6''
C51 C51
N52 N52
C53 C53
O53 O53
N54 N54
H2 H2
H3 H3
H6 H6
HN3 HN3
HN4 HN4
H2' H2'
H3' H3'
H4' H4'
H6' H6'
H2B H2''
H3B H3''
H4B H4''
H6B H6''
H511 1H51
H512 2H51
H52 H52
H541 1H54
H542 2H54