PDB Chemical Component 7MK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7MK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C8 |
1.532 |
1.530 |
| C10 |
C11 |
1.530 |
1.516 |
| N1 |
C11 |
1.489 |
1.469 |
| C8 |
C5 |
1.508 |
1.514 |
| C6 |
C5 |
1.390 |
1.383 |
| C6 |
C2 |
1.384 |
1.384 |
| C11 |
C9 |
1.585 |
1.515 |
| C5 |
C4 |
1.392 |
1.371 |
| C2 |
C3 |
1.377 |
1.382 |
| O2 |
C9 |
1.391 |
1.429 |
| C9 |
O1 |
1.406 |
1.429 |
| C9 |
C7 |
1.521 |
1.530 |
| C4 |
C1 |
1.390 |
1.384 |
| C4 |
C7 |
1.511 |
1.515 |
| C3 |
C1 |
1.385 |
1.383 |
| C1 |
H1 |
1.081 |
1.080 |
| C10 |
H9 |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C11 |
H11 |
1.100 |
1.090 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.080 |
| C7 |
H6 |
1.100 |
1.090 |
| C7 |
H5 |
1.100 |
1.091 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.091 |
| N1 |
H15 |
1.000 |
1.009 |
| N1 |
H16 |
0.999 |
1.009 |
| O1 |
H12 |
0.950 |
0.967 |
| O2 |
H13 |
0.950 |
0.967 |
| H14 |
N1 |
1.000 |
1.009 |
Bond Angles for 7MK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C8 |
113.6 |
110.9 |
| C10 |
C8 |
C5 |
112.6 |
108.4 |
| C8 |
C10 |
H9 |
108.4 |
109.2 |
| C8 |
C10 |
H10 |
108.4 |
109.2 |
| C10 |
C8 |
H8 |
108.6 |
109.7 |
| C10 |
C8 |
H7 |
108.7 |
109.7 |
| C10 |
C11 |
C9 |
116.6 |
114.5 |
| C11 |
C10 |
H9 |
108.4 |
109.2 |
| C11 |
C10 |
H10 |
108.4 |
109.2 |
| C10 |
C11 |
H11 |
107.1 |
108.5 |
| N1 |
C11 |
H11 |
107.5 |
108.2 |
| C6 |
C2 |
H2 |
120.1 |
119.9 |
| C11 |
C9 |
O1 |
106.9 |
109.2 |
| C11 |
C9 |
C7 |
116.2 |
110.9 |
| C9 |
C11 |
H11 |
106.5 |
108.5 |
| C5 |
C4 |
C7 |
120.1 |
120.1 |
| C3 |
C2 |
H2 |
120.2 |
120.0 |
| C2 |
C3 |
H3 |
120.1 |
120.0 |
| C9 |
O1 |
H12 |
109.5 |
114.0 |
| C9 |
C7 |
H6 |
107.9 |
109.6 |
| C9 |
C7 |
H5 |
107.9 |
109.8 |
| C4 |
C1 |
H1 |
119.5 |
120.2 |
| C4 |
C7 |
H6 |
107.9 |
109.7 |
| C4 |
C7 |
H5 |
107.9 |
109.6 |
| C3 |
C1 |
H1 |
119.5 |
120.2 |
| H9 |
C10 |
H10 |
109.5 |
109.1 |
| H6 |
C7 |
H5 |
109.4 |
109.6 |
| H8 |
C8 |
H7 |
109.5 |
109.8 |
| H15 |
N1 |
H16 |
109.5 |
109.5 |
Torsion Angles for 7MK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C10 |
C11 |
C9 |
57.6 |
68.1 |
| C11 |
C10 |
C8 |
H9 |
239.4 |
120.4 |
| C11 |
C10 |
C8 |
H10 |
120.6 |
239.7 |
| C8 |
C10 |
C11 |
H11 |
298.7 |
306.8 |
| H9 |
C10 |
C8 |
H10 |
241.2 |
119.3 |
| H8 |
C8 |
C10 |
H7 |
241.0 |
239.4 |
| C11 |
C10 |
C8 |
C5 |
275.1 |
274.4 |
| C8 |
C10 |
C11 |
H9 |
120.6 |
239.6 |
| C8 |
C10 |
C11 |
H10 |
239.4 |
120.4 |
| C11 |
C10 |
C8 |
H8 |
35.6 |
34.1 |
| C11 |
C10 |
C8 |
H7 |
154.6 |
154.7 |
| N1 |
C11 |
C10 |
H11 |
243.3 |
242.6 |
| C10 |
C11 |
C9 |
O1 |
184.3 |
171.5 |
| C10 |
C11 |
C9 |
C7 |
308.8 |
291.9 |
| C9 |
C11 |
C10 |
H11 |
119.0 |
121.3 |
| H9 |
C10 |
C11 |
H10 |
118.8 |
240.8 |
| N1 |
C11 |
C10 |
H9 |
61.3 |
309.8 |
| N1 |
C11 |
C10 |
H10 |
302.6 |
69.1 |
| C10 |
C11 |
N1 |
H11 |
116.5 |
117.5 |
| N1 |
C11 |
C9 |
O1 |
59.1 |
50.2 |
| C9 |
C11 |
N1 |
H11 |
245.3 |
242.4 |
| C5 |
C8 |
C10 |
H9 |
35.7 |
154.1 |
| C5 |
C8 |
C10 |
H10 |
154.5 |
34.8 |
| C10 |
C8 |
C5 |
H8 |
120.4 |
119.7 |
| C10 |
C8 |
C5 |
H7 |
239.5 |
240.3 |
| C10 |
C8 |
C5 |
C6 |
250.9 |
250.7 |
| C5 |
C6 |
C2 |
H2 |
181.4 |
179.7 |
| C6 |
C5 |
C4 |
C7 |
180.6 |
180.0 |
| C3 |
C2 |
C6 |
H2 |
180.0 |
180.1 |
| C6 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
| C9 |
C11 |
C10 |
C8 |
57.6 |
68.1 |
| C9 |
C11 |
C10 |
H9 |
297.1 |
188.5 |
| C9 |
C11 |
C10 |
H10 |
178.3 |
307.8 |
| C10 |
C11 |
C9 |
H11 |
240.7 |
238.7 |
| N1 |
C11 |
C9 |
H11 |
115.4 |
117.4 |
| C11 |
C9 |
O1 |
H12 |
180.0 |
180.1 |
| C11 |
C9 |
C7 |
H6 |
194.4 |
325.8 |
| C11 |
C9 |
C7 |
H5 |
312.5 |
205.4 |
| C10 |
C8 |
C5 |
C4 |
68.0 |
70.7 |
| C5 |
C4 |
C1 |
H1 |
180.6 |
180.0 |
| C5 |
C4 |
C7 |
H6 |
170.4 |
49.0 |
| C5 |
C4 |
C7 |
H5 |
52.3 |
169.4 |
| C6 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C2 |
C3 |
C1 |
H1 |
179.2 |
180.1 |
| O2 |
C9 |
C11 |
H11 |
195.3 |
173.5 |
| O2 |
C9 |
O1 |
H12 |
291.1 |
299.4 |
| O2 |
C9 |
C7 |
H6 |
70.9 |
205.5 |
| O2 |
C9 |
C7 |
H5 |
189.1 |
85.0 |
| C11 |
C9 |
O1 |
C7 |
127.6 |
121.5 |
| O1 |
C9 |
C11 |
H11 |
303.6 |
292.8 |
| O1 |
C9 |
C7 |
H6 |
316.8 |
86.3 |
| O1 |
C9 |
C7 |
H5 |
74.9 |
325.8 |
| C11 |
C9 |
C7 |
O1 |
237.6 |
239.6 |
| C7 |
C9 |
C11 |
H11 |
68.1 |
53.2 |
| C4 |
C7 |
C9 |
H6 |
239.1 |
119.7 |
| C4 |
C7 |
C9 |
H5 |
120.9 |
240.2 |
| H6 |
C7 |
C9 |
H5 |
241.9 |
120.5 |
| C3 |
C1 |
C4 |
H1 |
180.0 |
179.7 |
| C11 |
C9 |
C7 |
C4 |
73.5 |
85.6 |
| C9 |
C7 |
C4 |
H6 |
120.9 |
240.3 |
| C9 |
C7 |
C4 |
H5 |
239.1 |
119.9 |
| C7 |
C4 |
C1 |
H1 |
0.5 |
359.9 |
| H6 |
C7 |
C4 |
H5 |
118.1 |
239.6 |
| C4 |
C1 |
C3 |
H1 |
180.0 |
180.3 |
| C11 |
C10 |
H9 |
C8 |
123.8 |
238.6 |
| H9 |
C10 |
C8 |
C5 |
35.7 |
154.1 |
| C8 |
C10 |
H9 |
H10 |
118.1 |
240.7 |
| H9 |
C10 |
C8 |
H8 |
156.2 |
273.8 |
| H9 |
C10 |
C8 |
H7 |
275.2 |
34.4 |
| H9 |
C10 |
C11 |
C9 |
297.1 |
188.5 |
| C11 |
C10 |
H9 |
H10 |
241.9 |
119.2 |
| H9 |
C10 |
C11 |
H11 |
178.1 |
67.2 |
| C11 |
C10 |
H10 |
C8 |
236.2 |
121.4 |
| H10 |
C10 |
C8 |
C5 |
154.5 |
34.8 |
| C8 |
C10 |
H10 |
H9 |
241.9 |
119.3 |
| H10 |
C10 |
C8 |
H8 |
275.0 |
154.5 |
| H10 |
C10 |
C8 |
H7 |
34.0 |
275.1 |
| H10 |
C10 |
C11 |
C9 |
178.3 |
307.8 |
| C11 |
C10 |
H10 |
H9 |
118.1 |
240.8 |
| H10 |
C10 |
C11 |
H11 |
59.3 |
186.4 |
| H11 |
C11 |
C10 |
C8 |
298.7 |
306.8 |
| C10 |
C11 |
H11 |
C9 |
125.3 |
124.9 |
| H11 |
C11 |
C10 |
H9 |
178.1 |
67.2 |
| H11 |
C11 |
C10 |
H10 |
59.3 |
186.4 |
| H11 |
C11 |
C9 |
O1 |
303.6 |
292.8 |
| H11 |
C11 |
C9 |
C7 |
68.1 |
53.2 |
| H2 |
C2 |
C3 |
H3 |
359.8 |
0.1 |
| H3 |
C3 |
C2 |
H2 |
359.8 |
0.1 |
| H3 |
C3 |
C1 |
H1 |
359.2 |
359.9 |
| H4 |
C6 |
C2 |
H2 |
1.4 |
360.0 |
| C9 |
C7 |
H6 |
H5 |
117.1 |
239.4 |
| C4 |
C7 |
H6 |
H5 |
242.9 |
120.4 |
| C9 |
C7 |
H5 |
H6 |
242.9 |
120.5 |
| C4 |
C7 |
H5 |
H6 |
117.1 |
239.6 |
| C10 |
C8 |
H8 |
C5 |
237.1 |
241.0 |
| H8 |
C8 |
C10 |
H9 |
156.2 |
273.8 |
| H8 |
C8 |
C10 |
H10 |
275.0 |
154.5 |
| C10 |
C8 |
H8 |
H7 |
118.5 |
120.5 |
| C10 |
C8 |
H7 |
C5 |
122.9 |
119.0 |
| H7 |
C8 |
C10 |
H9 |
275.2 |
34.4 |
| H7 |
C8 |
C10 |
H10 |
34.0 |
275.1 |
| C10 |
C8 |
H7 |
H8 |
241.5 |
239.5 |
| H15 |
N1 |
C11 |
H11 |
63.5 |
302.4 |
| H16 |
N1 |
C11 |
H11 |
183.5 |
62.5 |