PDB Chemical Component 7MG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7MG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.482 1.479
P OP2 1.486 1.610
P OP3 1.598 1.610
P O5' 1.589 1.610
OP2 HOP2 0.951 0.967
OP3 HOP3 0.951 0.966
O5' C5' 1.421 1.428
C5' C4' 1.512 1.529
C5' H5' 1.116 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.459 1.445
C4' C3' 1.525 1.544
C4' H4' 1.116 1.091
O4' C1' 1.414 1.443
C3' O3' 1.432 1.428
C3' C2' 1.527 1.546
C3' H3' 1.115 1.090
O3' HO3' 0.949 0.968
C2' O2' 1.418 1.429
C2' C1' 1.523 1.544
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.966
C1' N9 1.457 1.465
C1' H1' 1.115 1.090
N9 C8 1.449 1.468
N9 C4 1.407 1.384
C8 N7 1.422 1.469
C8 H81 1.115 1.090
C8 H82 1.114 1.089
N7 C5 1.384 1.411
N7 CM7 1.496 1.465
C5 C6 1.390 1.402
C5 C4 1.397 1.385
C6 O6 1.210 1.222
C6 N1 1.383 1.348
N1 C2 1.378 1.361
N1 HN1 1.020 0.970
C2 N2 1.355 1.372
C2 N3 1.324 1.315
N2 HN21 1.020 0.970
N2 HN22 1.020 0.970
N3 C4 1.341 1.342
CM7 HM71 1.115 1.089
CM7 HM72 1.116 1.090
CM7 HM73 1.115 1.090

Bond Angles for 7MG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.5 109.4
OP1 P OP3 109.2 109.5
OP1 P O5' 108.4 109.5
OP2 P OP3 108.1 109.4
OP2 P O5' 107.5 109.5
P OP2 HOP2 119.5 106.8
OP3 P O5' 102.7 109.5
P OP3 HOP3 109.3 106.9
P O5' C5' 119.6 106.8
O5' C5' C4' 110.4 109.5
O5' C5' H5' 111.9 109.4
O5' C5' H5'' 111.9 109.5
C4' C5' H5' 111.9 109.5
C4' C5' H5'' 111.9 109.4
C5' C4' O4' 108.4 110.3
C5' C4' C3' 115.9 110.5
C5' C4' H4' 104.7 110.3
H5' C5' H5'' 98.5 109.4
O4' C4' C3' 105.8 104.8
O4' C4' H4' 115.0 110.3
C4' O4' C1' 109.5 105.2
C3' C4' H4' 107.4 110.4
C4' C3' O3' 109.7 110.5
C4' C3' C2' 101.8 104.1
C4' C3' H3' 114.8 110.5
O4' C1' C2' 104.6 104.9
O4' C1' N9 107.8 110.3
O4' C1' H1' 115.2 110.4
O3' C3' C2' 111.4 110.6
O3' C3' H3' 105.9 110.5
C3' O3' HO3' 109.7 106.8
C2' C3' H3' 113.3 110.6
C3' C2' O2' 115.5 110.5
C3' C2' C1' 100.9 104.0
C3' C2' H2' 111.9 110.5
O2' C2' C1' 111.2 110.8
O2' C2' H2' 101.8 110.4
C2' O2' HO2' 115.4 106.8
C1' C2' H2' 116.1 110.4
C2' C1' N9 113.9 110.4
C2' C1' H1' 109.3 110.3
N9 C1' H1' 106.2 110.3
C1' N9 C8 127.5 126.1
C1' N9 C4 125.1 126.1
C8 N9 C4 107.4 107.8
N9 C8 N7 107.3 105.6
N9 C8 H81 113.0 110.2
N9 C8 H82 113.0 110.3
N9 C4 C5 107.2 110.1
N9 C4 N3 124.8 130.5
N7 C8 H81 113.0 110.2
N7 C8 H82 113.0 110.2
C8 N7 C5 106.9 106.7
C8 N7 CM7 119.6 126.6
H81 C8 H82 97.4 110.2
C5 N7 CM7 133.5 126.7
N7 C5 C6 129.8 131.2
N7 C5 C4 111.1 109.8
N7 CM7 HM71 119.6 109.4
N7 CM7 HM72 108.6 109.5
N7 CM7 HM73 108.6 109.5
C6 C5 C4 119.1 119.0
C5 C6 O6 127.2 120.6
C5 C6 N1 112.3 118.8
C5 C4 N3 128.0 119.4
O6 C6 N1 120.5 120.6
C6 N1 C2 124.7 120.0
C6 N1 HN1 117.8 120.0
C2 N1 HN1 117.4 119.9
N1 C2 N2 116.2 119.3
N1 C2 N3 123.8 121.5
N2 C2 N3 120.0 119.2
C2 N2 HN21 116.2 120.0
C2 N2 HN22 109.8 120.0
C2 N3 C4 112.1 121.3
HN21 N2 HN22 109.8 120.0
HM71 CM7 HM72 108.5 109.4
HM71 CM7 HM73 108.7 109.5
HM72 CM7 HM73 101.4 109.5

Torsion Angles for 7MG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 234.8 119.9
OP2 P OP1 O5' 123.5 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 248.8 120.1
OP1 P OP3 HOP3 180.0 179.9
OP1 P O5' C5' 191.7 60.0
OP1 P OP2 OP3 125.8 240.0
OP1 P OP2 O5' 236.0 120.0
OP3 P OP2 O5' 110.3 240.1
OP2 P OP3 HOP3 311.6 60.0
OP2 P O5' C5' 61.2 180.0
OP1 P OP3 OP2 228.4 119.9
OP1 P OP3 O5' 115.0 239.9
OP2 P OP3 O5' 246.5 119.9
OP3 P OP2 HOP2 54.2 60.0
OP3 P O5' C5' 307.2 299.9
OP1 P O5' OP2 130.5 240.0
OP1 P O5' OP3 244.5 120.1
OP2 P O5' OP3 113.9 240.1
O5' P OP2 HOP2 303.9 180.0
O5' P OP3 HOP3 65.1 300.1
P O5' C5' C4' 214.5 180.0
P O5' C5' H5' 339.7 60.0
P O5' C5' H5'' 89.1 300.1
HOP2 OP2 P OP3 54.2 60.0
HOP2 OP2 P O5' 303.9 180.0
HOP3 OP3 P O5' 65.1 300.1
C4' C5' O5' H5' 234.7 120.0
C4' C5' O5' H5'' 125.3 239.9
O5' C5' C4' O4' 284.0 61.5
O5' C5' C4' C3' 42.8 176.9
O5' C5' C4' H4' 160.8 299.3
H5' C5' O5' H5'' 250.6 119.9
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.1
H5' C5' C4' H5'' 109.4 240.1
O4' C4' C5' C3' 241.3 244.5
O4' C4' C5' H4' 123.2 122.2
C5' C4' O4' C1' 124.8 159.5
C3' C4' C5' H4' 241.9 237.7
C5' C4' C3' O3' 146.8 98.3
C5' C4' C3' C2' 264.9 217.1
C5' C4' C3' H3' 27.7 335.8
O5' C5' H5' C4' 235.5 120.1
O5' C5' H5' H5'' 117.7 240.0
C4' C5' H5' H5'' 242.2 119.9
H5' C5' C4' O4' 158.7 181.5
H5' C5' C4' C3' 277.5 296.9
H5' C5' C4' H4' 35.6 59.3
O5' C5' H5'' C4' 124.5 239.9
O5' C5' H5'' H5' 242.2 120.0
C4' C5' H5'' H5' 117.8 240.1
H5'' C5' C4' O4' 49.3 301.4
H5'' C5' C4' C3' 168.1 56.8
H5'' C5' C4' H4' 286.1 179.2
O4' C4' C5' H5' 158.7 181.5
O4' C4' C5' H5'' 49.3 301.4
C5' C4' O4' C3' 124.9 119.0
C5' C4' O4' H4' 243.3 237.8
C3' C4' O4' H4' 118.3 118.8
O4' C4' C3' O3' 266.9 217.2
O4' C4' C3' C2' 25.0 335.9
O4' C4' C3' H3' 147.8 94.7
C4' O4' C1' C2' 334.8 319.5
C4' O4' C1' N9 213.3 200.6
C4' O4' C1' H1' 94.9 78.4
C3' C4' C5' H5' 277.5 296.9
C3' C4' C5' H5'' 168.1 56.8
C5' C4' C3' O4' 239.9 241.1
C5' C4' C3' H4' 116.6 122.3
O4' C4' C3' H4' 236.7 241.2
C3' C4' O4' C1' 359.9 40.5
O3' C3' C4' C2' 241.9 241.3
O3' C3' C4' H3' 119.1 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 237.2 241.3
C4' C3' C2' O2' 201.3 241.2
C4' C3' C2' C1' 321.2 0.1
C4' C3' C2' H2' 85.4 118.6
H4' C4' C5' H5' 35.6 59.3
H4' C4' C5' H5'' 286.1 179.2
C5' C4' H4' O4' 118.8 122.2
C5' C4' H4' C3' 236.3 237.5
O4' C4' H4' C3' 117.4 115.4
H4' C4' O4' C1' 241.5 281.7
H4' C4' C3' O3' 30.2 336.0
H4' C4' C3' C2' 148.3 94.7
H4' C4' C3' H3' 271.1 213.5
C1' O4' C4' C3' 359.9 40.5
C1' O4' C4' H4' 241.5 281.7
C3' C2' C1' O4' 39.9 23.9
O2' C2' C1' O4' 162.9 142.6
O4' C1' C2' H2' 278.7 265.3
C2' C1' O4' N9 121.5 118.9
C2' C1' O4' H1' 240.0 241.1
N9 C1' O4' H1' 118.4 122.2
O4' C1' N9 C8 116.7 237.0
O4' C1' N9 C4 296.6 57.1
O3' C3' C4' H4' 30.2 336.0
C4' C3' O3' C2' 112.0 114.7
C4' C3' O3' H3' 235.5 237.4
C2' C3' O3' H3' 123.6 122.8
O3' C3' C2' O2' 318.1 359.8
O3' C3' C2' C1' 78.1 118.8
O3' C3' C2' H2' 202.2 237.3
C2' C3' C4' H4' 148.3 94.7
C4' C3' C2' O3' 243.2 241.3
C4' C3' C2' H3' 123.9 118.6
O4' C1' C2' C3' 39.9 23.9
O3' C3' C2' H3' 240.7 237.3
C2' C3' O3' HO3' 68.1 65.3
O2' C2' C3' C1' 240.0 241.0
O2' C2' C3' H2' 115.9 122.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 235.9 241.5
C3' C2' C1' N9 157.4 142.8
C3' C2' C1' H1' 276.0 265.0
H3' C3' C4' H4' 271.1 213.5
C4' C3' H3' O3' 121.2 122.6
C4' C3' H3' C2' 243.6 245.3
O3' C3' H3' C2' 122.4 122.8
H3' C3' O3' HO3' 304.5 302.6
H3' C3' C2' O2' 77.4 122.5
H3' C3' C2' C1' 197.4 241.5
H3' C3' C2' H2' 321.5 360.0
HO3' O3' C3' C2' 68.1 65.3
HO3' O3' C3' H3' 304.5 302.6
O4' C1' C2' O2' 162.9 142.6
O2' C2' C3' H3' 77.4 122.5
C3' C2' O2' C1' 114.1 114.7
C3' C2' O2' H2' 238.5 237.4
C1' C2' O2' H2' 124.3 122.7
O2' C2' C1' N9 280.4 261.5
O2' C2' C1' H1' 39.0 23.7
O4' C1' C2' N9 242.5 241.1
O4' C1' C2' H1' 123.9 118.9
C1' C2' C3' H3' 197.4 241.5
C3' C2' C1' O2' 237.0 241.3
C3' C2' C1' H2' 121.2 118.6
O2' C2' C1' H2' 244.2 237.3
C1' C2' O2' HO2' 65.8 183.9
N9 C1' C2' H1' 241.4 237.8
C2' C1' N9 C8 1.1 121.5
C2' C1' N9 C4 181.1 301.6
H2' C2' C3' H3' 321.5 360.0
C3' C2' H2' O2' 123.9 122.6
C3' C2' H2' C1' 244.9 245.5
O2' C2' H2' C1' 121.0 122.9
H2' C2' O2' HO2' 301.5 61.2
H2' C2' C1' N9 36.2 24.2
H2' C2' C1' H1' 154.8 146.4
HO2' O2' C2' C1' 65.8 183.9
HO2' O2' C2' H2' 301.5 61.2
O4' C1' N9 C2' 115.5 115.5
O4' C1' N9 H1' 236.0 237.7
N9 C1' C2' H2' 36.2 24.2
C2' C1' N9 H1' 120.4 122.2
C8 N9 C1' C4 180.1 180.0
C1' N9 C8 N7 178.0 180.0
C1' N9 C8 H81 303.3 61.0
C1' N9 C8 H82 52.7 299.1
C1' N9 C4 C5 182.1 179.8
C1' N9 C4 N3 0.9 360.0
O4' C1' H1' C2' 242.6 244.5
O4' C1' H1' N9 119.3 122.2
H1' C1' C2' H2' 154.8 146.4
C2' C1' H1' N9 236.7 237.8
H1' C1' N9 C8 240.7 359.3
H1' C1' N9 C4 60.7 179.3
C8 N9 C1' H1' 240.7 359.3
C1' N9 C8 C4 180.0 180.0
C8 N9 C4 C5 2.0 359.8
C8 N9 C4 N3 180.9 180.0
N7 C8 N9 H81 234.7 119.0
N7 C8 N9 H82 125.3 240.9
N9 C8 N7 C5 1.1 0.3
N9 C8 N7 CM7 181.1 180.0
H81 C8 N9 H82 250.5 121.9
C4 N9 C1' H1' 60.7 179.3
C1' N9 C4 C8 180.0 180.0
C4 N9 C8 N7 358.1 360.0
C4 N9 C8 H81 123.3 240.9
C4 N9 C8 H82 232.8 119.0
N7 C5 C4 N9 358.6 0.4
C6 C5 C4 N9 178.1 180.0
C5 C4 N9 N3 181.2 179.8
C2 N3 C4 N9 180.9 180.3
N7 C8 N9 C4 358.1 360.0
N9 C8 N7 H81 125.3 241.0
N9 C8 N7 H82 234.7 119.1
H81 C8 N7 H82 109.5 238.1
C5 N7 C8 CM7 180.0 180.3
C8 N7 C5 C6 180.8 180.1
C8 N7 C5 C4 0.2 359.6
C8 N7 CM7 HM71 180.0 180.0
C8 N7 CM7 HM72 305.2 300.0
C8 N7 CM7 HM73 54.7 60.0
H81 C8 N9 C4 123.3 240.9
N9 C8 H81 N7 237.9 116.2
N9 C8 H81 H82 118.9 238.1
N7 C8 H81 H82 241.1 121.9
H81 C8 N7 C5 235.8 119.2
H81 C8 N7 CM7 55.8 299.0
H82 C8 N9 C4 232.8 119.0
N9 C8 H82 N7 122.1 243.8
N9 C8 H82 H81 241.1 121.9
N7 C8 H82 H81 118.9 238.1
H82 C8 N7 C5 126.4 241.2
H82 C8 N7 CM7 306.4 60.9
N9 C4 C5 N7 358.6 0.4
C5 N7 C8 H81 235.8 119.2
C5 N7 C8 H82 126.4 241.2
C8 N7 C5 CM7 180.0 179.7
C5 N7 CM7 HM71 0.0 359.7
C5 N7 CM7 HM72 125.2 119.7
C5 N7 CM7 HM73 234.7 239.7
C6 C5 N7 C4 180.6 180.5
N7 C5 C6 O6 0.6 359.4
N7 C5 C6 N1 180.7 179.5
N7 C5 C4 N3 179.8 180.2
CM7 N7 C8 H81 55.8 299.0
CM7 N7 C8 H82 306.4 60.9
C8 N7 CM7 C5 180.0 180.3
CM7 N7 C5 C6 0.8 0.4
CM7 N7 C5 C4 180.2 179.9
HM71 CM7 N7 HM72 234.8 240.0
HM71 CM7 N7 HM73 125.3 120.0
HM72 CM7 N7 HM73 250.5 240.0
N9 C4 C5 C6 178.1 180.0
C6 C5 N7 CM7 0.8 0.4
N7 C5 C6 C4 179.4 179.5
C6 C5 C4 N3 359.3 359.8
O6 C6 C5 N1 179.9 179.9
C5 C6 N1 C2 359.1 360.0
C5 C6 N1 HN1 179.1 180.0
N9 C4 C5 N3 178.8 180.2
C4 C5 N7 CM7 180.2 179.9
N7 C5 C4 C6 180.5 180.4
C4 C5 C6 O6 181.2 179.9
C4 C5 C6 N1 1.3 0.0
C2 N3 C4 C5 359.5 0.5
O6 C6 C5 C4 181.2 179.9
C5 C6 O6 N1 180.1 180.1
O6 C6 N1 C2 179.2 180.0
O6 C6 N1 HN1 359.2 0.0
N1 C6 C5 C4 1.3 0.0
C5 C6 N1 O6 179.9 179.9
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 179.3 180.0
C6 N1 C2 N3 359.6 0.3
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 179.7 179.7
N1 C2 N2 HN21 180.1 180.0
N1 C2 N2 HN22 54.7 0.0
N1 C2 N3 C4 1.1 359.5
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 359.3 360.0
HN1 N1 C2 N3 179.6 180.3
N2 C2 N1 HN1 359.3 360.0
N1 C2 N2 N3 180.3 180.3
N2 C2 N3 C4 181.4 179.8
HN21 N2 C2 HN22 125.3 180.0
N9 C4 N3 C2 180.9 180.3
C5 C4 N3 C2 359.5 0.5
N3 C2 N1 HN1 179.6 180.3
N1 C2 N3 N2 179.7 179.7
N3 C2 N2 HN21 359.8 359.8
N3 C2 N2 HN22 234.4 179.7
HN21 N2 C2 N3 359.8 359.8
C2 N2 HN21 HN22 234.6 180.0
HN22 N2 C2 N3 234.4 179.7
C2 N2 HN22 HN21 128.9 180.0
N9 C4 N3 C5 181.4 179.8
N7 CM7 HM71 HM72 125.2 120.0
N7 CM7 HM71 HM73 234.7 240.0
HM72 CM7 HM71 HM73 109.5 120.0
N7 CM7 HM72 HM71 228.6 240.0
N7 CM7 HM72 HM73 114.2 120.0
HM71 CM7 HM72 HM73 245.7 240.0
N7 CM7 HM73 HM71 131.5 120.0
N7 CM7 HM73 HM72 245.8 240.0
HM71 CM7 HM73 HM72 114.3 120.0