PDB Chemical Component 7KD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7KD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C33 |
S31 |
1.783 |
1.814 |
| O35 |
S31 |
1.515 |
1.422 |
| S31 |
O34 |
1.525 |
1.421 |
| S31 |
N30 |
1.730 |
1.655 |
| C32 |
N30 |
1.475 |
1.465 |
| N26 |
C27 |
1.413 |
1.323 |
| N26 |
C25 |
1.353 |
1.327 |
| N30 |
C25 |
1.354 |
1.390 |
| F9 |
C8 |
1.392 |
1.399 |
| C27 |
C28 |
1.379 |
1.383 |
| C25 |
C24 |
1.409 |
1.393 |
| F11 |
C8 |
1.289 |
1.398 |
| F10 |
C8 |
1.358 |
1.399 |
| C8 |
C1 |
1.456 |
1.507 |
| C28 |
N29 |
1.410 |
1.322 |
| C24 |
N29 |
1.337 |
1.319 |
| C24 |
C23 |
1.411 |
1.508 |
| N7 |
C23 |
1.473 |
1.465 |
| N7 |
C2 |
1.343 |
1.385 |
| C1 |
C2 |
1.414 |
1.397 |
| C1 |
C6 |
1.388 |
1.381 |
| C2 |
N3 |
1.348 |
1.329 |
| C6 |
N5 |
1.393 |
1.325 |
| N3 |
C4 |
1.340 |
1.325 |
| N5 |
C4 |
1.346 |
1.325 |
| C4 |
N12 |
1.340 |
1.385 |
| C18 |
C17 |
1.407 |
1.376 |
| C18 |
C13 |
1.416 |
1.391 |
| N12 |
C13 |
1.370 |
1.393 |
| C17 |
C16 |
1.398 |
1.398 |
| C13 |
C14 |
1.399 |
1.391 |
| C16 |
C19 |
1.418 |
1.476 |
| C16 |
C15 |
1.394 |
1.399 |
| C14 |
C15 |
1.387 |
1.377 |
| O21 |
C19 |
1.230 |
1.217 |
| C19 |
N20 |
1.368 |
1.347 |
| N20 |
C22 |
1.491 |
1.464 |
| C14 |
H1 |
1.080 |
1.080 |
| C15 |
H2 |
1.080 |
1.079 |
| C22 |
H3 |
1.100 |
1.090 |
| C22 |
H4 |
1.100 |
1.090 |
| C22 |
H5 |
1.099 |
1.091 |
| C27 |
H6 |
1.080 |
1.079 |
| C32 |
H7 |
1.100 |
1.090 |
| C32 |
H8 |
1.100 |
1.090 |
| C32 |
H9 |
1.100 |
1.091 |
| C33 |
H10 |
1.100 |
1.089 |
| C33 |
H11 |
1.100 |
1.091 |
| C33 |
H12 |
1.100 |
1.091 |
| N20 |
H13 |
1.000 |
0.970 |
| C17 |
H14 |
1.080 |
1.080 |
| C18 |
H15 |
1.080 |
1.080 |
| N12 |
H16 |
1.001 |
0.971 |
| C6 |
H17 |
1.080 |
1.080 |
| N7 |
H18 |
0.999 |
0.969 |
| C23 |
H19 |
1.100 |
1.090 |
| C23 |
H20 |
1.100 |
1.089 |
| C28 |
H21 |
1.080 |
1.080 |
Bond Angles for 7KD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C33 |
S31 |
O34 |
110.2 |
110.5 |
| C33 |
S31 |
N30 |
112.2 |
104.5 |
| S31 |
C33 |
H10 |
109.5 |
109.5 |
| S31 |
C33 |
H11 |
109.5 |
109.5 |
| S31 |
C33 |
H12 |
109.5 |
109.5 |
| C32 |
N30 |
C25 |
114.8 |
120.0 |
| N30 |
C32 |
H7 |
109.5 |
109.5 |
| N30 |
C32 |
H8 |
109.5 |
109.5 |
| N30 |
C32 |
H9 |
109.5 |
109.5 |
| C27 |
N26 |
C25 |
121.1 |
119.9 |
| N26 |
C27 |
C28 |
118.2 |
120.1 |
| N26 |
C27 |
H6 |
120.9 |
120.0 |
| C27 |
C28 |
N29 |
119.6 |
120.2 |
| C28 |
C27 |
H6 |
120.9 |
120.0 |
| C27 |
C28 |
H21 |
120.3 |
119.9 |
| C8 |
C1 |
C6 |
120.1 |
120.8 |
| N29 |
C24 |
C23 |
114.9 |
120.1 |
| C24 |
C23 |
N7 |
109.9 |
109.4 |
| C24 |
C23 |
H19 |
109.3 |
109.5 |
| C24 |
C23 |
H20 |
109.4 |
109.5 |
| C23 |
N7 |
H18 |
105.3 |
120.0 |
| N7 |
C23 |
H19 |
109.4 |
109.5 |
| N7 |
C23 |
H20 |
109.3 |
109.5 |
| C2 |
C1 |
C6 |
115.0 |
118.5 |
| C1 |
C2 |
N3 |
120.3 |
119.0 |
| C1 |
C6 |
N5 |
122.2 |
119.3 |
| C1 |
C6 |
H17 |
118.9 |
120.3 |
| C2 |
N3 |
C4 |
124.0 |
120.6 |
| C4 |
N12 |
H16 |
118.1 |
120.0 |
| C18 |
C17 |
H14 |
119.2 |
120.1 |
| C13 |
C14 |
C15 |
122.1 |
120.1 |
| C13 |
C14 |
H1 |
119.0 |
120.0 |
| C16 |
C19 |
N20 |
120.5 |
120.0 |
| C16 |
C15 |
H2 |
119.4 |
120.1 |
| C15 |
C14 |
H1 |
119.0 |
119.9 |
| C14 |
C15 |
H2 |
119.3 |
120.1 |
| C19 |
N20 |
C22 |
125.4 |
120.0 |
| C19 |
N20 |
H13 |
117.3 |
120.0 |
| N20 |
C22 |
H3 |
109.5 |
109.5 |
| N20 |
C22 |
H4 |
109.5 |
109.5 |
| N20 |
C22 |
H5 |
109.5 |
109.5 |
| H3 |
C22 |
H4 |
109.5 |
109.5 |
| H3 |
C22 |
H5 |
109.5 |
109.4 |
| H4 |
C22 |
H5 |
109.5 |
109.4 |
| H7 |
C32 |
H8 |
109.5 |
109.5 |
| H7 |
C32 |
H9 |
109.5 |
109.4 |
| H8 |
C32 |
H9 |
109.5 |
109.5 |
| H10 |
C33 |
H11 |
109.5 |
109.5 |
| H10 |
C33 |
H12 |
109.5 |
109.5 |
| H11 |
C33 |
H12 |
109.5 |
109.4 |
| H19 |
C23 |
H20 |
109.5 |
109.5 |
Torsion Angles for 7KD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H10 |
C33 |
S31 |
H11 |
240.0 |
240.0 |
| H10 |
C33 |
S31 |
H12 |
120.0 |
120.0 |
| H11 |
C33 |
S31 |
H12 |
240.0 |
240.0 |
| O35 |
S31 |
C33 |
H10 |
180.0 |
188.4 |
| O35 |
S31 |
C33 |
H11 |
300.0 |
308.4 |
| O35 |
S31 |
C33 |
H12 |
60.0 |
68.3 |
| C33 |
S31 |
O34 |
N30 |
121.9 |
248.2 |
| O34 |
S31 |
C33 |
H10 |
298.4 |
51.7 |
| O34 |
S31 |
C33 |
H11 |
58.4 |
171.7 |
| O34 |
S31 |
C33 |
H12 |
178.4 |
291.6 |
| C33 |
S31 |
N30 |
O34 |
239.4 |
116.1 |
| N30 |
S31 |
C33 |
H10 |
56.9 |
300.0 |
| N30 |
S31 |
C33 |
H11 |
176.9 |
60.0 |
| N30 |
S31 |
C33 |
H12 |
296.8 |
180.0 |
| S31 |
N30 |
C32 |
H7 |
180.0 |
275.0 |
| S31 |
N30 |
C32 |
H8 |
300.0 |
35.1 |
| S31 |
N30 |
C32 |
H9 |
60.0 |
155.1 |
| C33 |
S31 |
N30 |
C32 |
66.2 |
90.0 |
| H7 |
C32 |
N30 |
H8 |
240.0 |
239.9 |
| H7 |
C32 |
N30 |
H9 |
120.0 |
120.0 |
| H8 |
C32 |
N30 |
H9 |
240.0 |
240.0 |
| N26 |
C27 |
C28 |
N29 |
359.2 |
0.5 |
| C28 |
C27 |
N26 |
H6 |
180.0 |
179.2 |
| N26 |
C27 |
C28 |
H21 |
179.1 |
180.5 |
| C32 |
N30 |
C25 |
N26 |
311.5 |
274.4 |
| C25 |
N26 |
C27 |
C28 |
1.5 |
359.2 |
| C25 |
N26 |
C27 |
H6 |
181.5 |
180.0 |
| C33 |
S31 |
N30 |
C25 |
298.0 |
270.0 |
| C25 |
N30 |
C32 |
H7 |
304.8 |
95.1 |
| C25 |
N30 |
C32 |
H8 |
64.9 |
215.1 |
| C25 |
N30 |
C32 |
H9 |
184.9 |
335.1 |
| C28 |
C27 |
N26 |
C25 |
1.5 |
359.2 |
| N26 |
C27 |
C28 |
H6 |
180.0 |
180.8 |
| C25 |
C24 |
C23 |
H19 |
221.1 |
35.1 |
| C25 |
C24 |
C23 |
H20 |
341.0 |
155.2 |
| C2 |
C1 |
C8 |
C6 |
178.0 |
179.7 |
| C8 |
C1 |
C2 |
N3 |
181.4 |
180.3 |
| C8 |
C1 |
C6 |
N5 |
179.1 |
179.7 |
| C8 |
C1 |
C6 |
H17 |
359.1 |
359.7 |
| N29 |
C28 |
C27 |
H6 |
179.2 |
179.7 |
| C27 |
C28 |
N29 |
H21 |
180.0 |
180.0 |
| C27 |
C28 |
N29 |
C24 |
359.8 |
0.0 |
| N29 |
C24 |
C23 |
N7 |
281.1 |
94.9 |
| N29 |
C24 |
C23 |
H19 |
41.2 |
214.8 |
| N29 |
C24 |
C23 |
H20 |
161.1 |
334.8 |
| C24 |
C23 |
N7 |
H18 |
236.8 |
359.9 |
| N7 |
C23 |
C24 |
H19 |
239.9 |
240.0 |
| N7 |
C23 |
C24 |
H20 |
120.0 |
120.0 |
| H19 |
C23 |
C24 |
H20 |
240.1 |
240.0 |
| C24 |
C23 |
N7 |
H19 |
120.0 |
120.0 |
| C24 |
C23 |
N7 |
H20 |
239.9 |
240.0 |
| H19 |
C23 |
N7 |
H20 |
119.9 |
120.0 |
| C8 |
C1 |
C2 |
C6 |
181.9 |
180.3 |
| C2 |
C1 |
C6 |
N5 |
0.9 |
0.0 |
| C2 |
C1 |
C6 |
H17 |
180.9 |
180.0 |
| C1 |
C2 |
N3 |
C4 |
0.0 |
360.0 |
| C6 |
C1 |
C2 |
N3 |
359.5 |
0.0 |
| N3 |
C2 |
C1 |
C6 |
359.5 |
0.0 |
| C1 |
C6 |
N5 |
H17 |
180.0 |
180.0 |
| N3 |
C4 |
N12 |
H16 |
180.5 |
354.2 |
| C1 |
C6 |
N5 |
C4 |
359.2 |
360.0 |
| N5 |
C4 |
N12 |
H16 |
358.6 |
174.3 |
| C2 |
N3 |
C4 |
N12 |
178.2 |
180.0 |
| C18 |
C13 |
C14 |
H1 |
180.7 |
180.0 |
| N12 |
C13 |
C14 |
H1 |
0.8 |
359.7 |
| C17 |
C16 |
C15 |
H2 |
178.3 |
180.0 |
| C15 |
C14 |
C13 |
H1 |
180.0 |
180.1 |
| C13 |
C14 |
C15 |
H2 |
180.9 |
179.9 |
| C19 |
C16 |
C15 |
H2 |
359.7 |
0.1 |
| C16 |
C19 |
N20 |
C22 |
1.2 |
180.0 |
| C16 |
C19 |
N20 |
H13 |
181.2 |
360.0 |
| C16 |
C15 |
C14 |
H1 |
180.9 |
180.0 |
| C14 |
C15 |
C16 |
H2 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
H1 |
180.0 |
179.9 |
| C16 |
C15 |
C14 |
H2 |
180.0 |
180.0 |
| O21 |
C19 |
N20 |
H13 |
357.2 |
180.1 |
| C19 |
N20 |
C22 |
H3 |
180.0 |
299.9 |
| C19 |
N20 |
C22 |
H4 |
300.0 |
60.0 |
| C19 |
N20 |
C22 |
H5 |
60.0 |
180.0 |
| C19 |
N20 |
C22 |
H13 |
180.0 |
180.0 |
| H3 |
C22 |
N20 |
H4 |
240.0 |
240.0 |
| H3 |
C22 |
N20 |
H5 |
120.0 |
120.0 |
| H4 |
C22 |
N20 |
H5 |
240.0 |
240.0 |
| C13 |
C14 |
H1 |
C15 |
180.0 |
180.1 |
| H1 |
C14 |
C15 |
H2 |
0.9 |
0.0 |
| H2 |
C15 |
C14 |
H1 |
0.9 |
0.0 |
| N20 |
C22 |
H3 |
H4 |
120.0 |
120.1 |
| N20 |
C22 |
H3 |
H5 |
240.0 |
240.0 |
| H4 |
C22 |
H3 |
H5 |
120.0 |
119.9 |
| N20 |
C22 |
H4 |
H3 |
239.9 |
240.0 |
| N20 |
C22 |
H4 |
H5 |
120.0 |
120.0 |
| H3 |
C22 |
H4 |
H5 |
240.0 |
240.1 |
| N20 |
C22 |
H5 |
H3 |
120.0 |
120.0 |
| N20 |
C22 |
H5 |
H4 |
240.0 |
239.9 |
| H3 |
C22 |
H5 |
H4 |
120.0 |
120.0 |
| H6 |
C27 |
N26 |
C25 |
181.5 |
180.0 |
| N26 |
C27 |
H6 |
C28 |
180.0 |
179.2 |
| H6 |
C27 |
C28 |
N29 |
179.2 |
179.7 |
| H6 |
C27 |
C28 |
H21 |
359.1 |
359.8 |
| H7 |
C32 |
N30 |
C25 |
304.8 |
95.1 |
| N30 |
C32 |
H7 |
H8 |
120.0 |
120.0 |
| N30 |
C32 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C32 |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
C32 |
N30 |
C25 |
64.9 |
215.1 |
| N30 |
C32 |
H8 |
H7 |
240.0 |
240.0 |
| N30 |
C32 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
C32 |
H8 |
H9 |
240.0 |
240.0 |
| H9 |
C32 |
N30 |
C25 |
184.9 |
335.1 |
| N30 |
C32 |
H9 |
H7 |
120.0 |
120.0 |
| N30 |
C32 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C32 |
H9 |
H8 |
120.0 |
120.0 |
| H10 |
C33 |
S31 |
O34 |
298.4 |
51.7 |
| H10 |
C33 |
S31 |
N30 |
56.9 |
300.0 |
| S31 |
C33 |
H10 |
H11 |
120.0 |
120.0 |
| S31 |
C33 |
H10 |
H12 |
240.0 |
239.9 |
| H11 |
C33 |
H10 |
H12 |
120.0 |
119.9 |
| H11 |
C33 |
S31 |
O34 |
58.4 |
171.7 |
| H11 |
C33 |
S31 |
N30 |
176.9 |
60.0 |
| S31 |
C33 |
H11 |
H10 |
240.0 |
240.0 |
| S31 |
C33 |
H11 |
H12 |
120.0 |
120.0 |
| H10 |
C33 |
H11 |
H12 |
240.0 |
240.0 |
| H12 |
C33 |
S31 |
O34 |
178.4 |
291.6 |
| H12 |
C33 |
S31 |
N30 |
296.8 |
180.0 |
| S31 |
C33 |
H12 |
H10 |
120.0 |
120.1 |
| S31 |
C33 |
H12 |
H11 |
240.0 |
240.0 |
| H10 |
C33 |
H12 |
H11 |
120.0 |
120.0 |
| C19 |
N20 |
H13 |
C22 |
180.0 |
180.0 |
| H13 |
N20 |
C22 |
H3 |
360.0 |
119.9 |
| H13 |
N20 |
C22 |
H4 |
120.0 |
240.0 |
| H13 |
N20 |
C22 |
H5 |
240.0 |
360.0 |
| H15 |
C18 |
C17 |
H14 |
0.7 |
0.0 |
| C1 |
C6 |
H17 |
N5 |
180.0 |
180.0 |
| H18 |
N7 |
C23 |
H19 |
116.8 |
240.0 |
| H18 |
N7 |
C23 |
H20 |
356.9 |
120.0 |
| C24 |
C23 |
H19 |
N7 |
239.6 |
240.0 |
| C24 |
C23 |
H19 |
H20 |
119.8 |
120.0 |
| H19 |
C23 |
N7 |
H18 |
116.8 |
240.0 |
| N7 |
C23 |
H19 |
H20 |
240.2 |
240.0 |
| C24 |
C23 |
H20 |
N7 |
120.4 |
120.0 |
| C24 |
C23 |
H20 |
H19 |
240.2 |
240.0 |
| H20 |
C23 |
N7 |
H18 |
356.9 |
120.0 |
| N7 |
C23 |
H20 |
H19 |
119.8 |
120.0 |
| C27 |
C28 |
H21 |
N29 |
180.0 |
180.0 |
| H21 |
C28 |
C27 |
H6 |
359.1 |
359.8 |