Atom Nomenclature for 7HK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7HK

Atom Name (V3) Atom Name (V2)
O2 O2
C18 C18
N4 N4
C19 C19
C6 C6
C5 C5
C4 C4
C20 C20
C3 C3
C2 C2
C1 C1
O3 O3
C21 C21
O1 O1
C17 C17
C7 C7
N1 N1
C16 C16
C15 C15
C9 C9
C8 C8
N2 N2
C10 C10
C14 C14
C13 C13
N3 N3
C12 C12
C11 C11
H14 H14
H4 H4
H3 H3
H15 H15
H1 H1
H2 H2
H212 H212
H211 H211
H213 H213
H5 H5
H13 H13
H12 H12
H6 H6
H7 H7
H11 H11
H10 H10
H9 H9
H8 H8