Atom Nomenclature for 7HA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7HA

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
N4 N4
C5 C5
O6 O6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
CL13 CL13
C14 C14
O15 O15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
N23 N23
C24 C24
C25 C25
O26 O26
O27 O27
C28 C28
O29 O29
O30 O30
C31 C31
H1 H1
H1A H1A
H1B H1B
H8 H8
H9 H9
H11 H11
H12 H12
H14 H14
H14A H14A
H17 H17
H18 H18
H19 H19
H21 H21
H22 H22
H22A H22A
H24 H24
H24A H24A
HO27 HO27
H31 H31
H31A H31A
H31B H31B