PDB Chemical Component 7GU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7GU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.475 1.501
P OP2 1.485 1.617
P O5' 1.592 1.620
P OP3   1.617
OP2 HOP2 0.950 0.981
O5' C5' 1.430 1.416
N9 C4 1.357 1.368
N9 C8 1.375 1.374
N9 C1' 1.455 1.464
C4 N3 1.369 1.355
C4 C5 1.385 1.379
N3 C2 1.330 1.313
C2 N2 1.344 1.371
C2 N1 1.394 1.411
N2 HN21 1.019 0.994
N2 HN22 1.019 0.994
N1 C6 1.415 1.400
N1 HN1 1.020 1.015
C6 O6 1.236 1.225
C6 C5 1.435 1.442
C5 C7 1.393 1.411
C7 C8 1.305 1.380
C7 H7 1.103 1.081
C8 H8 1.103 1.081
C2' C1' 1.523 1.524
C2' C3' 1.523 1.513
C2' H2' 1.116 1.095
C2' H2'' 1.114 1.099
C5' C4' 1.515 1.517
C5' H5' 1.115 1.091
C5' H5'' 1.114 1.091
C4' O4' 1.437 1.436
C4' C3' 1.528 1.519
C4' H4' 1.115 1.097
O4' C1' 1.416 1.439
C1' H1' 1.116 1.094
C3' O3' 1.422 1.413
C3' H3' 1.114 1.097
O3' HO3' 0.950 0.970
OP3 HOP3   0.981

Bond Angles for 7GU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.9 115.3
OP1 P O5' 107.3 115.0
OP1 P OP3   115.0
OP2 P O5' 109.8 103.7
OP2 P OP3   103.3
P OP2 HOP2 119.8 118.9
O5' P OP3   102.9
P O5' C5' 120.8 118.5
P OP3 HOP3   118.9
O5' C5' C4' 110.9 108.7
O5' C5' H5' 111.7 109.2
O5' C5' H5'' 111.7 109.2
C4 N9 C8 107.4 109.3
C4 N9 C1' 125.3 126.1
N9 C4 N3 125.5 123.6
N9 C4 C5 105.1 107.7
C8 N9 C1' 127.3 124.7
N9 C8 C7 112.7 108.3
N9 C8 H8 125.9 120.8
N9 C1' C2' 125.3 113.8
N9 C1' O4' 111.8 109.4
N9 C1' H1' 94.9 105.1
N3 C4 C5 129.4 128.7
C4 N3 C2 112.7 113.6
C4 C5 C6 117.7 118.6
C4 C5 C7 110.7 108.0
N3 C2 N2 120.1 122.1
N3 C2 N1 122.9 122.6
N2 C2 N1 117.0 115.3
C2 N2 HN21 120.0 118.3
C2 N2 HN22 108.4 118.3
C2 N1 C6 125.1 125.1
C2 N1 HN1 116.7 117.5
HN21 N2 HN22 108.5 123.5
C6 N1 HN1 118.2 117.4
N1 C6 O6 119.6 124.9
N1 C6 C5 112.2 111.4
O6 C6 C5 128.2 123.7
C6 C5 C7 131.6 133.4
C5 C7 C8 104.1 106.8
C5 C7 H7 130.3 127.6
C8 C7 H7 125.5 125.6
C7 C8 H8 121.4 130.9
C1' C2' C3' 99.4 103.2
C1' C2' H2' 116.0 114.1
C1' C2' H2'' 116.0 110.0
C2' C1' O4' 111.7 107.7
C2' C1' H1' 95.0 111.7
C3' C2' H2' 116.1 112.8
C3' C2' H2'' 116.1 109.9
C2' C3' C4' 102.3 101.8
C2' C3' O3' 117.5 111.3
C2' C3' H3' 110.5 110.2
H2' C2' H2'' 94.4 106.8
C4' C5' H5' 111.6 110.1
C4' C5' H5'' 111.6 110.1
C5' C4' O4' 116.1 109.7
C5' C4' C3' 127.4 113.6
C5' C4' H4' 85.3 108.6
H5' C5' H5'' 98.7 109.6
O4' C4' C3' 106.9 105.5
O4' C4' H4' 118.1 108.2
C4' O4' C1' 105.9 108.1
C3' C4' H4' 100.4 111.1
C4' C3' O3' 113.1 112.4
C4' C3' H3' 115.1 111.5
O4' C1' H1' 115.4 109.1
O3' C3' H3' 99.0 109.4
C3' O3' HO3' 117.5 106.5

Torsion Angles for 7GU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 126.1 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.1 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 285.3 180.0
OP1 P OP3 HOP3   311.9
OP1 P OP2 O5' 235.0 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 153.5 53.2
OP2 P OP3 HOP3   78.4
OP1 P O5' OP2 131.9 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 305.0 175.4
O5' P OP3 HOP3   186.1
P O5' C5' C4' 137.4 180.0
P O5' C5' H5' 262.6 300.1
P O5' C5' H5'' 12.2 59.9
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 305.0 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 234.8 239.9
C4' C5' O5' H5'' 125.2 120.1
O5' C5' C4' O4' 168.4 61.8
O5' C5' C4' C3' 309.8 179.5
O5' C5' C4' H4' 49.2 303.7
H5' C5' O5' H5'' 250.5 240.2
C8 N9 C4 C1' 178.8 180.0
C4 N9 C8 C7 359.8 0.0
C4 N9 C8 H8 179.8 180.0
C4 N9 C1' C2' 292.8 92.5
C4 N9 C1' O4' 73.2 212.9
C4 N9 C1' H1' 193.1 330.0
N3 C4 N9 C5 179.5 180.0
N9 C4 N3 C2 180.4 180.0
N9 C4 C5 C6 179.4 180.0
N9 C4 C5 C7 359.5 0.0
C4 N9 C8 C1' 181.2 180.0
C8 N9 C4 N3 180.0 180.0
C8 N9 C4 C5 0.4 360.0
C8 N9 C1' C2' 114.2 272.5
C8 N9 C1' O4' 254.6 32.9
C8 N9 C1' H1' 14.5 150.0
C5 C7 C8 N9 359.9 360.0
N9 C8 C7 H7 179.9 180.0
C7 C8 N9 H8 180.0 180.0
C4 N9 C1' C8 178.6 180.0
C1' N9 C4 N3 1.1 0.0
C1' N9 C4 C5 181.6 180.0
C1' N9 C8 C7 178.6 180.0
C1' N9 C8 H8 358.6 360.0
N9 C1' C2' C3' 165.2 102.8
N9 C1' C2' H2' 290.5 340.0
N9 C1' C2' H2'' 40.0 220.0
C2' C1' N9 O4' 219.5 239.5
C2' C1' N9 H1' 99.6 122.5
C4' O4' C1' N9 210.6 231.2
O4' C1' N9 H1' 240.1 242.9
N3 C4 N9 C8 180.0 180.0
N3 C4 N9 C1' 1.1 0.0
N9 C4 N3 C5 180.6 180.0
N3 C4 C5 C6 359.8 360.0
N3 C4 C5 C7 180.0 180.0
C4 N3 C2 N2 180.2 180.0
C4 N3 C2 N1 0.4 360.0
C5 C4 N9 C8 0.4 360.0
C5 C4 N9 C1' 181.6 180.0
N9 C4 C5 N3 179.5 180.0
C5 C4 N3 C2 359.9 0.0
N1 C6 C5 C4 0.2 0.0
O6 C6 C5 C4 180.5 180.0
C6 C5 C4 C7 179.8 180.0
C4 C5 C7 C8 0.4 360.0
C4 C5 C7 H7 180.3 180.0
C2 N3 C4 C5 359.9 0.0
N2 C2 N3 N1 179.8 180.0
N3 C2 N2 HN21 180.0 51.8
N3 C2 N2 HN22 54.7 231.9
N3 C2 N1 C6 359.7 0.0
N3 C2 N1 HN1 179.6 180.0
N3 C2 N2 N1 180.2 180.0
N2 C2 N1 C6 179.9 180.0
N2 C2 N1 HN1 359.8 359.9
HN21 N2 C2 HN22 125.3 179.9
N3 C2 N1 N2 179.8 180.0
N1 C2 N2 HN21 359.8 231.8
N1 C2 N2 HN22 234.6 51.9
C6 N1 C2 HN1 180.0 180.1
C2 N1 C6 O6 179.8 179.9
C2 N1 C6 C5 360.0 360.0
HN21 N2 C2 N1 359.8 231.8
C2 N2 HN21 HN22 234.8 180.1
HN22 N2 C2 N1 234.6 51.9
C2 N2 HN22 HN21 131.8 179.9
C4 C5 C6 N1 0.2 0.0
C2 N1 C6 HN1 180.0 179.9
O6 C6 N1 C5 179.8 180.0
N1 C6 C5 C7 180.0 180.0
C2 N1 HN1 C6 180.0 180.1
HN1 N1 C6 O6 359.8 360.0
HN1 N1 C6 C5 180.0 180.0
C4 C5 C6 O6 180.5 180.0
O6 C6 N1 HN1 359.8 360.0
N1 C6 O6 C5 180.3 180.1
O6 C6 C5 C7 0.3 0.0
C4 C5 C6 C7 180.2 180.0
C5 C6 N1 HN1 180.0 180.0
N1 C6 C5 O6 179.7 180.0
C6 C5 C7 C8 180.6 180.0
C6 C5 C7 H7 0.5 0.0
N9 C8 C7 C5 359.9 360.0
C4 C5 C7 C6 179.8 180.0
C8 C7 C5 H7 180.0 180.0
C5 C7 C8 H8 179.9 180.0
C7 C8 N9 C1' 178.6 180.0
N9 C8 C7 H8 180.0 180.0
C5 C7 C8 H7 180.0 180.0
C5 C7 H7 C8 180.0 179.9
H7 C7 C8 H8 359.9 360.0
H8 C8 N9 C1' 358.6 360.0
N9 C8 H8 C7 180.0 180.0
H8 C8 C7 H7 359.9 360.0
N9 C1' C2' O4' 140.5 121.4
N9 C1' C2' H1' 260.4 241.2
C3' C2' C1' H2' 234.7 122.8
C3' C2' C1' H2'' 125.3 242.8
C1' C2' C3' C4' 325.6 33.0
C1' C2' C3' O3' 90.1 152.9
C1' C2' C3' H3' 202.6 274.5
H2' C2' C1' H2'' 250.5 120.0
C4' O4' C1' C2' 356.6 355.4
O4' C1' C2' H1' 119.9 119.8
C1' C2' C3' H2' 125.2 236.3
C1' C2' C3' H2'' 234.8 117.3
C3' C2' C1' O4' 24.8 341.4
C3' C2' C1' H1' 264.9 221.6
H2' C2' C3' H2'' 109.6 240.9
C5' C4' C3' C2' 251.3 202.8
O4' C4' C3' C2' 35.5 323.0
C2' C3' C4' H4' 159.3 80.0
C4' C3' C2' O3' 235.5 240.1
C4' C3' C2' H3' 123.0 118.4
O3' C3' C2' H3' 247.5 238.4
C2' C3' O3' HO3' 180.0 306.9
C1' C2' H2' C3' 243.8 117.4
C1' C2' H2' H2'' 121.8 238.2
H2' C2' C1' O4' 150.0 218.6
H2' C2' C1' H1' 30.1 98.8
C3' C2' H2' H2'' 238.0 120.9
H2' C2' C3' C4' 200.4 156.6
H2' C2' C3' O3' 324.9 276.6
H2' C2' C3' H3' 77.4 38.2
C1' C2' H2'' C3' 116.2 247.1
C1' C2' H2'' H2' 238.2 124.3
H2'' C2' C1' O4' 259.5 98.6
H2'' C2' C1' H1' 139.6 338.8
C3' C2' H2'' H2' 121.9 237.3
H2'' C2' C3' C4' 90.8 275.7
H2'' C2' C3' O3' 215.3 35.7
H2'' C2' C3' H3' 327.8 157.3
O5' C5' C4' H5' 125.3 119.6
O5' C5' C4' H5'' 234.7 240.5
C2' C3' C4' C5' 251.3 202.8
H5' C5' C4' H5'' 109.4 120.9
O4' C4' C5' C3' 218.6 242.2
O4' C4' C5' H4' 119.1 118.0
C5' C4' O4' C1' 128.8 148.9
C3' C4' C5' H4' 260.5 235.8
C5' C4' C3' O3' 123.9 83.6
C5' C4' C3' H3' 11.1 320.3
O5' C5' H5' C4' 235.2 240.7
O5' C5' H5' H5'' 117.6 119.5
C4' C5' H5' H5'' 242.5 238.8
H5' C5' C4' O4' 43.1 302.2
H5' C5' C4' C3' 184.5 60.0
H5' C5' C4' H4' 283.9 184.1
O5' C5' H5'' C4' 124.8 119.2
O5' C5' H5'' H5' 242.3 240.4
C4' C5' H5'' H5' 117.5 121.2
H5'' C5' C4' O4' 293.6 181.3
H5'' C5' C4' C3' 75.0 299.1
H5'' C5' C4' H4' 174.5 63.3
N9 C1' O4' C4' 210.6 231.2
C2' C1' O4' C4' 356.6 355.4
C2' C3' C4' O4' 35.5 323.0
O4' C4' C5' H5' 43.1 302.2
O4' C4' C5' H5'' 293.6 181.3
C5' C4' O4' C3' 148.8 122.8
C5' C4' O4' H4' 260.9 241.7
C3' C4' O4' H4' 112.1 119.0
O4' C4' C3' O3' 268.1 203.8
O4' C4' C3' H3' 155.3 80.5
C4' O4' C1' H1' 103.6 116.8
C4' C3' C2' H2' 200.4 156.6
C4' C3' C2' H2'' 90.8 275.7
C2' C3' C4' O3' 127.3 119.2
C2' C3' C4' H3' 240.2 242.5
C3' C4' C5' H5' 184.5 60.0
C3' C4' C5' H5'' 75.0 299.1
C5' C4' C3' O4' 215.8 239.8
C5' C4' C3' H4' 92.0 122.8
O4' C4' C3' H4' 236.2 243.0
C3' C4' O4' C1' 340.0 26.2
O3' C3' C4' H3' 112.8 123.3
C4' C3' O3' HO3' 298.9 60.3
H4' C4' C5' H5' 283.9 184.1
H4' C4' C5' H5'' 174.5 63.3
C5' C4' H4' O4' 117.2 119.0
C5' C4' H4' C3' 232.9 234.3
O4' C4' H4' C3' 115.6 115.3
H4' C4' O4' C1' 227.9 267.2
H4' C4' C3' O3' 32.0 320.8
H4' C4' C3' H3' 279.1 197.5
N9 C1' O4' C2' 214.0 235.8
N9 C1' O4' H1' 107.0 114.5
O4' C1' C2' C3' 24.8 341.4
O4' C1' C2' H2' 150.0 218.6
O4' C1' C2' H2'' 259.5 98.6
C2' C1' O4' H1' 253.0 238.6
C1' O4' C4' C3' 340.0 26.2
C1' O4' C4' H4' 227.9 267.2
N9 C1' H1' C2' 126.1 123.9
N9 C1' H1' O4' 243.0 242.8
H1' C1' C2' C3' 264.9 221.6
H1' C1' C2' H2' 30.1 98.8
H1' C1' C2' H2'' 139.6 338.8
C2' C1' H1' O4' 116.9 118.9
O3' C3' C2' H2' 324.9 276.6
O3' C3' C2' H2'' 215.3 35.7
C2' C3' O3' C4' 241.1 246.6
C2' C3' O3' H3' 118.8 122.1
O3' C3' C4' H4' 32.0 320.8
C4' C3' O3' H3' 237.7 235.5
H3' C3' C2' H2' 77.4 38.2
H3' C3' C2' H2'' 327.8 157.3
C2' C3' H3' C4' 115.2 112.3
C2' C3' H3' O3' 236.1 237.3
H3' C3' C4' H4' 279.1 197.5
C4' C3' H3' O3' 120.9 125.0
H3' C3' O3' HO3' 61.3 184.8
HO3' O3' C3' H3' 61.3 184.8