Atom Nomenclature for 7G8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7G8

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
C8 C4
C13 C5
C20 C6
C21 C7
C22 C8
C24 C9
C28 C10
O34 O1
C33 C11
N35 N1
C36 C12
C31 C13
N30 N2
C29 C14
C32 C15
C27 C16
O26 O2
C23 C17
C25 C18
N19 N3
C16 C19
N15 N4
C14 C20
F18 F1
N17 N5
C12 C21
N11 N6
C2 C22
C3 C23
C1 C24
N7 N7
O10 O3
C9 C25
C37 C26
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24