PDB Chemical Component 7CY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7CY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N7 |
C8 |
1.361 |
1.301 |
| N7 |
C5 |
1.344 |
1.355 |
| C8 |
N9 |
1.348 |
1.363 |
| C2' |
O2' |
1.434 |
1.429 |
| C2' |
C3' |
1.526 |
1.543 |
| C2' |
C1' |
1.525 |
1.549 |
| O3' |
C3' |
1.440 |
1.428 |
| C3' |
C4' |
1.541 |
1.539 |
| N6 |
C6 |
1.352 |
1.384 |
| C5 |
C6 |
1.482 |
1.405 |
| C5 |
C4 |
1.465 |
1.405 |
| N9 |
C1' |
1.476 |
1.465 |
| N9 |
C4 |
1.316 |
1.372 |
| C1' |
C6' |
1.508 |
1.549 |
| C6 |
N1 |
1.354 |
1.329 |
| C4 |
N3 |
1.348 |
1.329 |
| C4' |
C6' |
1.514 |
1.543 |
| C4' |
C5' |
1.545 |
1.530 |
| C5' |
O5' |
1.435 |
1.429 |
| N1 |
C2 |
1.349 |
1.320 |
| N3 |
C2 |
1.343 |
1.316 |
| C2 |
H1 |
1.080 |
1.080 |
| C8 |
H2 |
1.080 |
1.080 |
| O2' |
H3 |
0.950 |
0.967 |
| C2' |
H4 |
1.100 |
1.091 |
| C3' |
H5 |
1.100 |
1.091 |
| O3' |
H6 |
0.950 |
0.967 |
| C4' |
H7 |
1.100 |
1.090 |
| C5' |
H8 |
1.099 |
1.090 |
| C5' |
H9 |
1.100 |
1.090 |
| O5' |
H10 |
0.950 |
0.967 |
| C1' |
H11 |
1.100 |
1.090 |
| C6' |
H12 |
1.099 |
1.089 |
| C6' |
H13 |
1.100 |
1.090 |
| N6 |
H14 |
1.000 |
0.970 |
| N6 |
H15 |
1.001 |
0.970 |
Bond Angles for 7CY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C8 |
H2 |
124.7 |
125.0 |
| C8 |
N9 |
C1' |
129.1 |
126.3 |
| N9 |
C8 |
H2 |
124.6 |
125.0 |
| C2' |
O2' |
H3 |
109.5 |
114.0 |
| C3' |
C2' |
C1' |
105.8 |
104.2 |
| C2' |
C3' |
C4' |
105.0 |
106.6 |
| C3' |
C2' |
H4 |
108.9 |
110.5 |
| C2' |
C3' |
H5 |
108.7 |
110.0 |
| C2' |
C1' |
C6' |
106.5 |
102.8 |
| C1' |
C2' |
H4 |
108.9 |
110.6 |
| C2' |
C1' |
H11 |
108.3 |
110.8 |
| O3' |
C3' |
C4' |
112.5 |
110.1 |
| O3' |
C3' |
H5 |
109.8 |
110.0 |
| C3' |
C4' |
C6' |
103.8 |
106.6 |
| C3' |
C4' |
C5' |
120.7 |
110.0 |
| C4' |
C3' |
H5 |
108.5 |
110.0 |
| C3' |
C4' |
H7 |
106.9 |
110.0 |
| C5 |
C4 |
N3 |
119.9 |
119.1 |
| N9 |
C1' |
H11 |
108.9 |
110.8 |
| N9 |
C4 |
N3 |
133.3 |
134.9 |
| C4' |
C6' |
C1' |
102.2 |
104.2 |
| C6' |
C1' |
H11 |
108.5 |
110.8 |
| C1' |
C6' |
H12 |
111.2 |
110.5 |
| C1' |
C6' |
H13 |
111.2 |
110.5 |
| C5' |
C4' |
C6' |
110.7 |
110.1 |
| C6' |
C4' |
H7 |
107.2 |
110.0 |
| C4' |
C6' |
H12 |
111.2 |
110.5 |
| C4' |
C6' |
H13 |
111.2 |
110.5 |
| C4' |
C5' |
O5' |
107.2 |
109.5 |
| C5' |
C4' |
H7 |
106.9 |
110.1 |
| C4' |
C5' |
H8 |
110.0 |
109.5 |
| C4' |
C5' |
H9 |
110.0 |
109.4 |
| O5' |
C5' |
H8 |
110.1 |
109.5 |
| O5' |
C5' |
H9 |
110.0 |
109.5 |
| C5' |
O5' |
H10 |
109.5 |
114.0 |
| N1 |
C2 |
H1 |
118.6 |
118.8 |
| N3 |
C2 |
H1 |
118.6 |
118.7 |
| H8 |
C5' |
H9 |
109.5 |
109.4 |
| H12 |
C6' |
H13 |
109.5 |
110.5 |
| H14 |
N6 |
H15 |
109.5 |
120.0 |
Torsion Angles for 7CY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N9 |
C8 |
N7 |
H2 |
180.0 |
180.0 |
| N7 |
C5 |
C4 |
N3 |
180.1 |
180.0 |
| N7 |
C8 |
N9 |
H2 |
180.0 |
180.0 |
| C8 |
N9 |
C1' |
H11 |
188.2 |
178.1 |
| C8 |
N9 |
C4 |
N3 |
180.1 |
180.1 |
| C3' |
C2' |
O2' |
H3 |
180.0 |
298.5 |
| C3' |
C2' |
C1' |
C6' |
16.4 |
37.9 |
| C1' |
C2' |
C3' |
H4 |
243.1 |
241.3 |
| C3' |
C2' |
C1' |
H11 |
259.9 |
279.6 |
| O3' |
C3' |
C2' |
C4' |
122.4 |
119.3 |
| O3' |
C3' |
C2' |
H5 |
238.4 |
238.6 |
| C2' |
C3' |
C4' |
C6' |
328.9 |
0.0 |
| C2' |
C3' |
C4' |
C5' |
204.3 |
240.7 |
| C4' |
C3' |
C2' |
H5 |
115.9 |
119.3 |
| C2' |
C3' |
C4' |
H7 |
82.1 |
119.3 |
| C8 |
N9 |
C1' |
C2' |
309.1 |
301.4 |
| C1' |
C2' |
O2' |
H3 |
62.0 |
183.8 |
| C1' |
C2' |
C3' |
C4' |
9.1 |
336.4 |
| C3' |
C2' |
C1' |
H4 |
116.9 |
118.7 |
| C1' |
C2' |
C3' |
H5 |
253.1 |
217.1 |
| N9 |
C1' |
C2' |
H11 |
238.8 |
236.6 |
| C4' |
C6' |
C1' |
C2' |
324.4 |
322.1 |
| C6' |
C1' |
C2' |
H11 |
116.5 |
118.3 |
| C2' |
C1' |
C6' |
H12 |
83.2 |
203.4 |
| C2' |
C1' |
C6' |
H13 |
205.6 |
80.7 |
| O3' |
C3' |
C2' |
C1' |
131.5 |
95.7 |
| C2' |
C3' |
O3' |
C4' |
241.9 |
242.8 |
| O3' |
C3' |
C2' |
H4 |
248.4 |
214.4 |
| C2' |
C3' |
O3' |
H5 |
121.0 |
121.4 |
| O3' |
C3' |
C4' |
C6' |
206.7 |
240.7 |
| O3' |
C3' |
C4' |
C5' |
82.1 |
121.4 |
| C4' |
C3' |
O3' |
H5 |
239.1 |
238.6 |
| O3' |
C3' |
C4' |
H7 |
319.9 |
360.0 |
| C4' |
C3' |
C2' |
C1' |
9.1 |
336.4 |
| C4' |
C3' |
C2' |
H4 |
126.0 |
95.1 |
| C2' |
C3' |
C4' |
H5 |
243.9 |
240.7 |
| O3' |
C3' |
C4' |
H5 |
121.7 |
121.4 |
| C3' |
C4' |
C6' |
C1' |
40.9 |
23.6 |
| C5' |
C4' |
C3' |
C6' |
235.4 |
240.7 |
| C6' |
C4' |
C3' |
H7 |
246.8 |
240.7 |
| C3' |
C4' |
C6' |
H12 |
282.1 |
142.3 |
| C3' |
C4' |
C6' |
H13 |
159.7 |
264.9 |
| C3' |
C4' |
C5' |
O5' |
192.4 |
293.5 |
| C5' |
C4' |
C3' |
H7 |
122.2 |
121.4 |
| C3' |
C4' |
C5' |
H8 |
312.1 |
53.6 |
| C3' |
C4' |
C5' |
H9 |
72.8 |
173.6 |
| C6 |
C5 |
C4 |
N3 |
360.0 |
360.0 |
| N9 |
C4 |
C5 |
N3 |
179.6 |
180.1 |
| C1' |
N9 |
C8 |
H2 |
359.8 |
0.0 |
| N9 |
C1' |
C2' |
H4 |
21.8 |
37.6 |
| C2' |
C1' |
N9 |
H11 |
120.9 |
123.3 |
| C1' |
N9 |
C4 |
N3 |
359.7 |
0.1 |
| C6' |
C1' |
N9 |
H11 |
240.7 |
236.7 |
| N9 |
C1' |
C6' |
H12 |
319.1 |
85.1 |
| N9 |
C1' |
C6' |
H13 |
81.5 |
322.4 |
| C5 |
C4 |
N9 |
N3 |
180.4 |
179.9 |
| C8 |
N9 |
C1' |
C6' |
68.9 |
54.8 |
| C6' |
C1' |
C2' |
H4 |
259.6 |
279.3 |
| C2' |
C1' |
C6' |
H11 |
243.6 |
241.7 |
| N9 |
C1' |
C6' |
H11 |
119.5 |
123.3 |
| C5' |
C4' |
C6' |
C1' |
171.7 |
142.9 |
| C1' |
C6' |
C4' |
H7 |
287.9 |
264.3 |
| C4' |
C6' |
C1' |
H12 |
241.2 |
118.7 |
| C4' |
C6' |
C1' |
H13 |
118.8 |
241.4 |
| H12 |
C6' |
C1' |
H13 |
237.6 |
122.7 |
| C6 |
N1 |
C2 |
H1 |
180.1 |
179.9 |
| C4 |
N3 |
C2 |
H1 |
180.2 |
180.0 |
| C2' |
C1' |
C6' |
C4' |
324.4 |
322.1 |
| C3' |
C4' |
C6' |
C5' |
229.2 |
240.7 |
| C6' |
C4' |
C3' |
H5 |
85.0 |
119.3 |
| C3' |
C4' |
C6' |
H7 |
112.9 |
119.2 |
| C4' |
C6' |
C1' |
H11 |
80.8 |
80.4 |
| C1' |
C6' |
C4' |
H12 |
118.8 |
241.3 |
| C1' |
C6' |
C4' |
H13 |
241.2 |
118.7 |
| C6' |
C4' |
C5' |
O5' |
71.1 |
176.4 |
| C5' |
C4' |
C6' |
H7 |
243.8 |
238.5 |
| C6' |
C4' |
C5' |
H8 |
190.7 |
296.4 |
| C6' |
C4' |
C5' |
H9 |
311.4 |
56.4 |
| H12 |
C6' |
C4' |
H13 |
122.4 |
237.4 |
| C3' |
C4' |
C5' |
C6' |
121.3 |
117.2 |
| C5' |
C4' |
C3' |
H5 |
320.4 |
0.0 |
| C3' |
C4' |
C5' |
H7 |
237.8 |
238.6 |
| C6' |
C4' |
C5' |
H7 |
116.4 |
121.4 |
| C5' |
C4' |
C6' |
H12 |
52.9 |
261.6 |
| C5' |
C4' |
C6' |
H13 |
290.5 |
24.2 |
| O5' |
C5' |
C4' |
H8 |
240.3 |
239.9 |
| O5' |
C5' |
C4' |
H9 |
119.6 |
120.0 |
| C4' |
C5' |
O5' |
H10 |
180.0 |
180.0 |
| H8 |
C5' |
C4' |
H9 |
239.3 |
240.0 |
| O5' |
C5' |
C4' |
C6' |
71.1 |
176.4 |
| O5' |
C5' |
C4' |
H7 |
314.6 |
54.9 |
| C4' |
C5' |
O5' |
H8 |
119.6 |
120.1 |
| C4' |
C5' |
O5' |
H9 |
240.4 |
240.1 |
| H8 |
C5' |
O5' |
H9 |
120.7 |
120.0 |
| N3 |
C2 |
N1 |
H1 |
180.0 |
180.1 |
| N1 |
C2 |
N3 |
H1 |
180.0 |
179.9 |
| H2 |
C8 |
N9 |
C1' |
359.8 |
0.0 |
| H4 |
C2' |
O2' |
H3 |
301.4 |
61.1 |
| C3' |
C2' |
H4 |
C1' |
245.1 |
245.2 |
| H4 |
C2' |
C3' |
C4' |
126.0 |
95.1 |
| H4 |
C2' |
C3' |
H5 |
10.0 |
335.8 |
| H4 |
C2' |
C1' |
C6' |
259.6 |
279.3 |
| H4 |
C2' |
C1' |
H11 |
143.0 |
160.9 |
| H5 |
C3' |
C2' |
C1' |
253.1 |
217.1 |
| C2' |
C3' |
H5 |
C4' |
113.7 |
117.2 |
| H5 |
C3' |
C2' |
H4 |
10.0 |
335.8 |
| O3' |
C3' |
H5 |
C4' |
236.7 |
238.6 |
| H5 |
C3' |
C4' |
C6' |
85.0 |
119.3 |
| H5 |
C3' |
C4' |
C5' |
320.4 |
0.0 |
| H5 |
C3' |
C4' |
H7 |
198.1 |
238.6 |
| H6 |
O3' |
C3' |
C4' |
298.1 |
178.7 |
| H6 |
O3' |
C3' |
H5 |
59.0 |
300.1 |
| C3' |
C4' |
H7 |
C6' |
249.2 |
242.9 |
| C3' |
C4' |
H7 |
C5' |
130.5 |
121.4 |
| H7 |
C4' |
C3' |
H5 |
198.1 |
238.6 |
| H7 |
C4' |
C6' |
C1' |
287.9 |
264.3 |
| C5' |
C4' |
H7 |
C6' |
118.7 |
121.5 |
| H7 |
C4' |
C6' |
H12 |
169.1 |
23.1 |
| H7 |
C4' |
C6' |
H13 |
46.8 |
145.6 |
| H7 |
C4' |
C5' |
O5' |
314.6 |
54.9 |
| H7 |
C4' |
C5' |
H8 |
74.3 |
175.0 |
| H7 |
C4' |
C5' |
H9 |
195.0 |
294.9 |
| H8 |
C5' |
C4' |
C6' |
190.7 |
296.4 |
| C4' |
C5' |
H8 |
O5' |
242.1 |
239.9 |
| H8 |
C5' |
C4' |
H7 |
74.3 |
175.0 |
| C4' |
C5' |
H8 |
H9 |
121.0 |
120.0 |
| O5' |
C5' |
H8 |
H9 |
238.9 |
240.0 |
| H8 |
C5' |
O5' |
H10 |
60.3 |
59.9 |
| H9 |
C5' |
C4' |
C6' |
311.4 |
56.4 |
| C4' |
C5' |
H9 |
O5' |
117.9 |
120.0 |
| H9 |
C5' |
C4' |
H7 |
195.0 |
294.9 |
| C4' |
C5' |
H9 |
H8 |
239.0 |
240.0 |
| O5' |
C5' |
H9 |
H8 |
121.1 |
120.0 |
| H9 |
C5' |
O5' |
H10 |
299.6 |
300.0 |
| H10 |
O5' |
C5' |
H8 |
60.3 |
59.9 |
| H10 |
O5' |
C5' |
H9 |
299.6 |
300.0 |
| C2' |
C1' |
H11 |
C6' |
115.2 |
113.4 |
| H11 |
C1' |
C2' |
H4 |
143.0 |
160.9 |
| H11 |
C1' |
C6' |
H12 |
199.6 |
321.7 |
| H11 |
C1' |
C6' |
H13 |
322.0 |
199.0 |
| C4' |
C6' |
H12 |
C1' |
113.3 |
245.2 |
| H12 |
C6' |
C1' |
H11 |
199.6 |
321.7 |
| C1' |
C6' |
H12 |
H13 |
123.4 |
237.3 |
| H12 |
C6' |
C4' |
H7 |
169.1 |
23.1 |
| C4' |
C6' |
H12 |
H13 |
236.6 |
122.5 |
| C4' |
C6' |
H13 |
C1' |
246.7 |
114.8 |
| H13 |
C6' |
C1' |
H11 |
322.0 |
199.0 |
| C1' |
C6' |
H13 |
H12 |
236.6 |
122.7 |
| H13 |
C6' |
C4' |
H7 |
46.8 |
145.6 |
| C4' |
C6' |
H13 |
H12 |
123.4 |
237.5 |