Atom Nomenclature for 7CP

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7CP

Atom Name (V3) Atom Name (V2)
C1L C1L
C1J C1J
N1W N1W
C1A C1A
C1K C1K
C1M C1M
C1Y C1Y
N1N N1N
C1O C1O
O1D O1D
C1R C1R
N1X N1X
C1B C1B
C1U C1U
C1Q C1Q
CL1F CL1F
C1P C1P
CL1E CL1E
C1H C1H
C1I C1I
C1T C1T
C1S C1S
C1V C1V
C1G C1G
N1C N1C
H1L H1L
H1LA H1LA
H1J H1J
H1JA H1JA
H1A H1A
H1AA H1AA
H1AB H1AB
H1K H1K
H1KA H1KA
H1M H1M
H1MA H1MA
HN1N HN1N
H1B H1B
H1BA H1BA
H1BB H1BB
H1H H1H
H1I H1I
H1V H1V