Atom Nomenclature for 7CJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7CJ

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C22 C6
O01 O1
S02 S1
N03 N1
C04 C7
C05 C8
C06 C9
N07 N2
C08 C10
C09 C11
C11 C12
O12 O2
C14 C13
C16 C14
C18 C15
C19 C16
F21 F1
O23 O3
H102 H1
H101 H2
H131 H3
H151 H4
H171 H5
H221 H6
H051 H9
H081 H10
H082 H11
H091 H12
H092 H13
H141 H14
H181 H15
H191 H16
H031 H18