PDB Chemical Component 7CH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7CH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N3 |
1.350 |
1.314 |
| C2 |
N1 |
1.347 |
1.321 |
| N3 |
C4 |
1.338 |
1.333 |
| O2' |
C2' |
1.437 |
1.429 |
| C4' |
O4' |
1.421 |
1.425 |
| C4' |
C5' |
1.509 |
1.516 |
| C4' |
C3' |
1.510 |
1.553 |
| O4' |
C1' |
1.429 |
1.470 |
| C5' |
O5' |
1.425 |
1.449 |
| C1' |
C2' |
1.513 |
1.549 |
| C1' |
N9 |
1.466 |
1.466 |
| O5' |
P |
1.628 |
1.623 |
| N1 |
C6 |
1.354 |
1.330 |
| C4 |
N9 |
1.318 |
1.368 |
| C4 |
C5 |
1.460 |
1.407 |
| C2' |
C3' |
1.509 |
1.534 |
| N9 |
C8 |
1.356 |
1.371 |
| C3' |
O3' |
1.406 |
1.431 |
| O3' |
P |
1.619 |
1.631 |
| O2P |
P |
1.505 |
1.479 |
| P |
O1P |
1.498 |
1.611 |
| C6 |
C5 |
1.494 |
1.403 |
| C6 |
N6 |
1.371 |
1.383 |
| C5 |
C7 |
1.341 |
1.461 |
| C8 |
C7 |
1.365 |
1.343 |
| O1P |
H1 |
0.950 |
0.967 |
| C3' |
H2 |
1.100 |
1.091 |
| C4' |
H3 |
1.100 |
1.090 |
| C5' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.090 |
| C2' |
H6 |
1.100 |
1.090 |
| O2' |
H7 |
0.949 |
0.967 |
| C1' |
H8 |
1.100 |
1.090 |
| C7 |
H9 |
1.080 |
1.079 |
| C8 |
H10 |
1.080 |
1.080 |
| C2 |
H11 |
1.080 |
1.081 |
| N6 |
H12 |
1.000 |
0.970 |
| N6 |
H13 |
1.000 |
0.971 |
Bond Angles for 7CH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.0 |
121.1 |
| N1 |
C2 |
H11 |
118.2 |
118.6 |
| O2' |
C2' |
H6 |
112.0 |
110.5 |
| C5' |
C4' |
O4' |
114.8 |
116.6 |
| C4' |
O4' |
C1' |
105.4 |
105.3 |
| O4' |
C4' |
H3 |
109.4 |
109.6 |
| C4' |
C5' |
O5' |
104.4 |
106.8 |
| C5' |
C4' |
H3 |
108.2 |
109.5 |
| C4' |
C5' |
H4 |
110.7 |
110.0 |
| C4' |
C5' |
H5 |
110.7 |
110.0 |
| C4' |
C3' |
H2 |
108.7 |
111.4 |
| O4' |
C1' |
N9 |
108.9 |
109.7 |
| O4' |
C1' |
H8 |
110.2 |
110.4 |
| O5' |
C5' |
H4 |
110.7 |
109.9 |
| O5' |
C5' |
H5 |
110.7 |
110.0 |
| C1' |
C2' |
H6 |
110.9 |
110.7 |
| C1' |
N9 |
C8 |
128.2 |
125.0 |
| N9 |
C1' |
H8 |
109.7 |
109.9 |
| N1 |
C6 |
N6 |
121.3 |
120.8 |
| C4 |
N9 |
C8 |
108.3 |
110.1 |
| C4 |
C5 |
C7 |
107.5 |
106.2 |
| C2' |
C3' |
H2 |
108.7 |
111.3 |
| N9 |
C8 |
C7 |
111.0 |
109.8 |
| N9 |
C8 |
H10 |
124.5 |
125.1 |
| O2P |
P |
O1P |
121.0 |
109.9 |
| P |
O1P |
H1 |
109.5 |
114.0 |
| C6 |
N6 |
H12 |
109.5 |
120.0 |
| C6 |
N6 |
H13 |
109.5 |
120.0 |
| C5 |
C7 |
H9 |
126.8 |
126.6 |
| C8 |
C7 |
H9 |
126.8 |
126.6 |
| H4 |
C5' |
H5 |
109.5 |
110.1 |
| H12 |
N6 |
H13 |
109.5 |
119.9 |
Torsion Angles for 7CH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
N6 |
180.2 |
180.0 |
| C1' |
C2' |
O2' |
H6 |
124.8 |
123.1 |
| O2' |
C2' |
C3' |
H2 |
162.7 |
148.0 |
| O4' |
C4' |
C5' |
O5' |
190.5 |
176.9 |
| C5' |
C4' |
O4' |
H3 |
238.1 |
234.9 |
| O4' |
C4' |
C5' |
H4 |
309.7 |
296.2 |
| O4' |
C4' |
C5' |
H5 |
71.3 |
57.5 |
| O4' |
C4' |
C3' |
H2 |
63.9 |
75.9 |
| C4' |
O4' |
C1' |
N9 |
213.6 |
214.1 |
| C4' |
O4' |
C1' |
H8 |
93.3 |
92.8 |
| C5' |
C4' |
O4' |
C1' |
171.8 |
162.5 |
| O4' |
C4' |
C5' |
H3 |
122.5 |
125.1 |
| C5' |
C4' |
C3' |
H2 |
300.2 |
311.4 |
| O5' |
C5' |
C4' |
H4 |
240.8 |
240.8 |
| O5' |
C5' |
C4' |
H5 |
119.2 |
119.4 |
| H4 |
C5' |
C4' |
H5 |
238.4 |
238.6 |
| C2' |
C3' |
C4' |
H2 |
245.6 |
241.4 |
| C1' |
O4' |
C4' |
H3 |
293.7 |
287.5 |
| O4' |
C1' |
C2' |
H6 |
235.2 |
240.7 |
| O4' |
C1' |
N9 |
C8 |
41.5 |
22.2 |
| N9 |
C1' |
O4' |
H8 |
120.3 |
121.3 |
| O5' |
C5' |
C4' |
O4' |
190.5 |
176.9 |
| O5' |
C5' |
C4' |
H3 |
68.0 |
51.8 |
| C4' |
C5' |
O5' |
H4 |
119.2 |
119.3 |
| C4' |
C5' |
O5' |
H5 |
240.8 |
240.6 |
| H4 |
C5' |
O5' |
H5 |
121.6 |
121.3 |
| O2' |
C2' |
C1' |
H6 |
234.6 |
237.0 |
| C4' |
O4' |
C1' |
C2' |
334.9 |
333.2 |
| C1' |
C2' |
C3' |
H2 |
280.4 |
266.6 |
| O4' |
C1' |
N9 |
H8 |
239.4 |
238.4 |
| N9 |
C1' |
C2' |
H6 |
354.5 |
359.7 |
| C4 |
N9 |
C1' |
C8 |
183.5 |
180.3 |
| C1' |
N9 |
C8 |
C7 |
181.7 |
179.8 |
| C1' |
N9 |
C8 |
H10 |
1.7 |
0.1 |
| O5' |
P |
O1P |
H1 |
122.0 |
61.2 |
| C6 |
N1 |
C2 |
H11 |
182.1 |
180.1 |
| N1 |
C6 |
N6 |
H12 |
360.0 |
0.0 |
| N1 |
C6 |
N6 |
H13 |
120.0 |
180.0 |
| C1' |
N9 |
C4 |
C8 |
177.1 |
179.7 |
| C4 |
N9 |
C1' |
H8 |
345.6 |
324.2 |
| C4 |
N9 |
C8 |
C7 |
358.6 |
359.5 |
| C4 |
N9 |
C8 |
H10 |
178.6 |
179.8 |
| C5 |
C4 |
N9 |
C8 |
2.1 |
0.3 |
| C4 |
C5 |
C7 |
H9 |
181.3 |
180.1 |
| C4' |
C3' |
C2' |
H2 |
114.4 |
118.7 |
| C8 |
N9 |
C1' |
H8 |
162.1 |
143.9 |
| N9 |
C8 |
C7 |
H9 |
179.9 |
180.1 |
| O3' |
P |
O1P |
H1 |
231.6 |
178.8 |
| O2P |
P |
O1P |
H1 |
360.0 |
300.0 |
| C6 |
C5 |
C7 |
H9 |
0.5 |
360.0 |
| H12 |
N6 |
C6 |
H13 |
240.0 |
180.0 |
| N9 |
C8 |
C7 |
C5 |
359.9 |
0.4 |
| C8 |
C7 |
C5 |
H9 |
180.0 |
179.7 |
| N9 |
C8 |
C7 |
H10 |
180.0 |
180.2 |
| C5 |
C7 |
C8 |
H9 |
180.0 |
180.3 |
| C5' |
C4' |
H3 |
O4' |
125.8 |
129.0 |
| H3 |
C4' |
O4' |
C1' |
293.7 |
287.5 |
| H3 |
C4' |
C5' |
O5' |
68.0 |
51.8 |
| H3 |
C4' |
C5' |
H4 |
187.2 |
171.1 |
| H3 |
C4' |
C5' |
H5 |
308.8 |
292.4 |
| H3 |
C4' |
C3' |
H2 |
177.7 |
192.1 |
| H4 |
C5' |
C4' |
O4' |
309.7 |
296.2 |
| C4' |
C5' |
H4 |
O5' |
244.7 |
242.7 |
| H4 |
C5' |
C4' |
H3 |
187.2 |
171.1 |
| C4' |
C5' |
H4 |
H5 |
122.3 |
121.3 |
| O5' |
C5' |
H4 |
H5 |
237.7 |
238.7 |
| H5 |
C5' |
C4' |
O4' |
71.3 |
57.5 |
| C4' |
C5' |
H5 |
O5' |
115.4 |
117.5 |
| H5 |
C5' |
C4' |
H3 |
308.8 |
292.4 |
| C4' |
C5' |
H5 |
H4 |
237.7 |
238.7 |
| O5' |
C5' |
H5 |
H4 |
122.3 |
121.2 |
| H6 |
C2' |
C3' |
H2 |
37.8 |
25.1 |
| H7 |
O2' |
C2' |
H6 |
55.2 |
302.9 |
| O4' |
C1' |
H8 |
N9 |
119.8 |
121.2 |
| H8 |
C1' |
C2' |
H6 |
116.0 |
120.8 |
| H8 |
C1' |
N9 |
C8 |
162.1 |
143.9 |
| N9 |
C8 |
H10 |
C7 |
180.0 |
179.7 |
| H10 |
C8 |
C7 |
H9 |
359.9 |
359.9 |
| H11 |
C2 |
N1 |
C6 |
182.1 |
180.1 |
| C6 |
N6 |
H12 |
H13 |
120.0 |
180.0 |
| C6 |
N6 |
H13 |
H12 |
240.0 |
180.0 |