PDB Chemical Component 7BG

Ideal Model

Chemical Description

Name 2-amino-7-benzyl-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-6-oxo-6,9-dihydro-1H-purin-7-ium
Formula C17 H20 F N5 O7 P
Formal charge 1
Molecular weight 456.342 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 51
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O1
Bond count 54
Aromatic bond count 11

Chemical Identifiers

Systematic name (ACDLabs) 2-amino-7-benzyl-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-6-oxo-6,9-dihydro-1H-purin-7-ium
Systematic name (OpenEye OEToolkits) [(2R,3R,4S,5R)-5-[2-azanyl-6-oxidanylidene-7-(phenylmethyl)-1H-purin-7-ium-9-yl]-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(c[n+](Cc3ccccc3)c2C(=O)N1)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]4F
SMILES (CACTVS) NC1=Nc2n(c[n+](Cc3ccccc3)c2C(=O)N1)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4F
Stereo SMILES (OpenEye) c1ccc(cc1)C[n+]2cn(c3c2C(=O)NC(=N3)N)[C@H]4[C@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)F
InChI descriptor InChI=1S/C17H19FN5O7P/c18-11-13(24)10(7-29-31(26,27)28)30-16(11)23-8-22(6-9-4-2-1-3-5-9)12-14(23)20-17(19)21-15(12)25/h1-5,8,10-11,13,16,24H,6-7H2,(H4-,19,20,21,25,26,27,28)/p+1/t10-,11+,13-,16-/m1/s1
InChIKey descriptor DTTUAYCVFOVSDP-DDFXLWFNSA-O

Status Information

Last modified 2016-03-04
Created 2015-03-16
Release status REL
Model PDB code 4YMM
Processing site RCSB