PDB Chemical Component 7BG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7BG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP2 P 1.408 1.610
OP1 P 1.413 1.610
P O5' 1.471 1.610
O3' C3' 1.344 1.429
O5' C5' 1.393 1.430
C5' C4' 1.528 1.529
C4' C3' 1.493 1.545
C4' O4' 1.347 1.445
C3' C2' 1.454 1.545
O4' C1' 1.395 1.444
C2' C1' 1.491 1.545
C2' F1' 1.053 1.399
C1' N9 1.457 1.465
N9 C8 1.319 1.366
N9 C4 1.323 1.368
C8 N7 1.323 1.301
C4 N3 1.322 1.338
C4 C5 1.324 1.400
N3 C2 1.308 1.315
N7 C5 1.318 1.355
N7 C10 1.461 1.466
C16 C15 1.383 1.382
C16 C11 1.388 1.382
C15 C14 1.378 1.382
C5 C6 1.302 1.414
C2 N2 1.313 1.372
C2 N1 1.367 1.363
C10 C11 1.379 1.507
C11 C12 1.382 1.382
C6 N1 1.352 1.351
C6 O6 1.212 1.219
C14 C13 1.384 1.383
C12 C13 1.384 1.383
OP2 H1 0.950 0.967
OP1 H2 0.950 0.967
C5' H3 1.100 1.090
C5' H4 1.100 1.090
C4' H5 1.100 1.091
C3' H6 1.100 1.090
O3' H7 0.950 0.967
C2' H8 1.100 1.089
C1' H9 1.100 1.090
C8 H10 1.080 1.080
N2 H11 1.001 0.970
N2 H12 1.000 0.970
N1 H13 1.000 0.970
C10 H14 1.100 1.089
C10 H15 1.100 1.091
C12 H16 1.080 1.080
C13 H17 1.080 1.080
C14 H18 1.080 1.080
C15 H19 1.080 1.080
C16 H20 1.080 1.079
P O1 1.565 1.480

Bond Angles for 7BG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P O5' 106.7 109.5
P OP2 H1 109.5 114.0
OP2 P O1 106.6 109.4
OP1 P O5' 108.3 109.5
OP1 P O1 106.1 109.5
P O5' C5' 117.5 123.0
O5' P O1 108.4 109.5
O3' C3' C2' 103.8 110.5
O3' C3' H6 114.4 110.6
O5' C5' C4' 110.6 109.5
O5' C5' H3 109.2 109.5
O5' C5' H4 109.2 109.4
C5' C4' C3' 108.7 110.4
C5' C4' O4' 102.0 110.4
C4' C5' H3 109.2 109.5
C4' C5' H4 109.2 109.5
C5' C4' H5 112.3 110.4
O4' C4' C3' 104.8 104.8
C4' C3' C2' 106.0 104.1
C3' C4' H5 112.8 110.3
C4' C3' H6 111.9 110.5
C4' O4' C1' 105.0 105.3
O4' C4' H5 115.5 110.4
C3' C2' C1' 101.1 104.1
C3' C2' F1' 100.7 110.5
C2' C3' H6 112.5 110.5
C3' C2' H8 111.5 110.5
O4' C1' C2' 109.4 104.8
O4' C1' N9 91.6 110.4
O4' C1' H9 112.0 110.4
F1' C2' C1' 110.1 110.5
C2' C1' N9 120.7 110.4
C1' C2' H8 110.9 110.5
C2' C1' H9 110.5 110.4
F1' C2' H8 120.4 110.6
C1' N9 C8 123.8 126.3
C1' N9 C4 127.8 126.3
N9 C1' H9 111.1 110.4
C8 N9 C4 108.0 107.5
N9 C8 N7 107.9 109.8
N9 C8 H10 126.1 125.1
N9 C4 N3 130.8 134.2
N9 C4 C5 108.0 106.1
C8 N7 C5 108.2 109.4
C8 N7 C10 128.1 125.3
N7 C8 H10 126.0 125.2
N3 C4 C5 121.2 119.7
C4 N3 C2 118.9 121.1
C4 C5 C6 121.5 118.6
N3 C2 N2 118.3 119.0
N3 C2 N1 120.7 121.9
N7 C10 C11 102.5 109.5
N7 C10 H14 111.2 109.5
N7 C10 H15 111.2 109.4
C16 C15 H19 120.8 120.0
C15 C14 H18 119.3 120.1
N2 C2 N1 121.1 119.1
C2 N2 H11 120.0 120.0
C2 N2 H12 120.0 119.9
C2 N1 H13 120.5 119.8
C10 C11 C12 120.7 119.9
C11 C10 H14 111.2 109.5
C11 C10 H15 111.2 109.5
C11 C12 C13 118.9 120.0
C11 C12 H16 120.5 120.1
C6 N1 H13 120.6 119.8
C14 C13 H17 119.9 120.0
C13 C12 H16 120.6 119.9
C12 C13 H17 119.9 120.0
H3 C5' H4 109.5 109.5
H11 N2 H12 120.0 120.0
H14 C10 H15 109.5 109.5

Torsion Angles for 7BG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 O5' 123.7 240.0
OP1 P OP2 O1 239.4 120.0
OP2 P O5' C5' 325.2 175.0
O5' P OP2 O1 115.7 240.0
OP2 P OP1 O5' 237.1 120.0
OP1 P OP2 H1 239.4 60.0
OP2 P OP1 O1 120.9 240.0
OP1 P O5' C5' 194.4 295.0
O5' P OP1 O1 243.8 120.0
O5' P OP2 H1 115.7 180.0
OP2 P O5' O1 245.5 119.9
OP1 P O5' O1 114.7 239.9
P O5' C5' C4' 122.3 180.0
P O5' C5' H3 242.4 300.0
P O5' C5' H4 2.1 60.0
C4' C3' O3' C2' 112.0 114.7
O3' C3' C4' H5 344.3 336.3
C4' C3' O3' H6 235.1 237.4
O3' C3' C2' C1' 125.2 118.7
O3' C3' C2' F1' 238.5 237.3
C2' C3' O3' H6 123.0 122.7
O3' C3' C2' H8 7.3 360.0
C5' O5' P O1 79.7 55.0
O5' C5' C4' C3' 182.8 185.0
O5' C5' C4' O4' 72.5 69.6
C4' C5' O5' H3 239.8 239.9
C4' C5' O5' H4 120.1 120.0
O5' C5' C4' H5 308.3 307.3
H3 C5' O5' H4 240.3 240.1
O5' C5' C4' H3 120.2 120.0
O5' C5' C4' H4 239.8 240.0
O4' C4' C5' C3' 249.7 244.6
C5' C4' C3' C2' 220.0 217.2
C3' C4' C5' H5 234.5 237.7
C5' C4' C3' H6 343.0 335.8
C5' C4' O4' C1' 150.8 159.3
O4' C4' C5' H5 124.2 122.4
H3 C5' C4' H4 119.7 120.0
O3' C3' C4' C2' 249.5 241.3
O3' C3' C4' H6 126.5 122.7
C5' C4' C3' O4' 251.6 241.1
C3' C4' C5' H3 62.6 65.0
C3' C4' C5' H4 303.0 305.0
C5' C4' C3' H5 125.2 122.3
C3' C4' O4' C1' 37.5 40.5
O4' C4' C3' H5 233.6 241.1
C4' C3' C2' C1' 12.2 0.0
C4' C3' C2' F1' 125.4 118.6
C2' C3' C4' H6 237.0 241.4
C4' C3' C2' H8 254.2 241.3
C5' C4' O4' C3' 113.3 118.9
O4' C4' C5' H3 312.3 309.6
O4' C4' C5' H4 192.6 189.6
C5' C4' O4' H5 238.0 237.7
O4' C4' C3' C2' 328.4 336.0
C3' C4' O4' H5 124.7 118.8
O4' C4' C3' H6 91.5 94.7
C4' O4' C1' C2' 329.3 319.5
C4' O4' C1' N9 205.7 200.7
C4' O4' C1' H9 92.2 78.3
O3' C3' C2' H6 235.7 237.3
C2' C3' C4' H5 94.8 94.9
C4' C3' C2' H6 122.6 118.6
O4' C1' C2' C3' 10.1 24.0
F1' C2' C3' C1' 113.2 118.6
C3' C2' C1' N9 114.2 142.8
C1' C2' C3' H8 117.9 118.7
C3' C2' C1' H9 246.2 265.1
F1' C2' C3' H8 231.2 237.3
C1' O4' C4' C3' 37.5 40.5
C1' O4' C4' H5 272.8 281.7
C3' C2' C1' O4' 10.1 24.0
F1' C2' C1' O4' 264.2 265.4
C2' C1' O4' N9 123.5 118.8
O4' C1' C2' H8 128.4 142.7
C2' C1' O4' H9 237.0 241.2
O4' C1' N9 C8 21.3 23.6
O4' C1' N9 C4 209.4 203.2
N9 C1' O4' H9 113.5 122.3
C3' C2' C1' F1' 105.9 118.6
C1' C2' C3' H6 249.5 241.4
C3' C2' C1' H8 241.7 241.3
O4' C1' C2' N9 255.8 241.2
O4' C1' C2' H9 123.9 118.8
F1' C2' C1' H8 135.8 122.7
C2' C1' N9 C8 267.5 268.2
C2' C1' N9 C4 95.6 87.9
N9 C1' C2' H9 228.0 237.6
C3' C2' F1' C1' 253.8 245.4
F1' C2' C3' H6 2.8 0.0
C3' C2' F1' H8 122.9 122.7
O4' C1' C2' F1' 264.2 265.4
F1' C2' C1' N9 8.3 24.2
C1' C2' F1' H8 229.0 237.3
F1' C2' C1' H9 140.3 146.5
O4' C1' N9 C2' 113.8 115.4
O4' C1' N9 H9 245.6 237.7
N9 C1' C2' H8 232.5 261.5
C2' C1' N9 H9 131.8 122.3
C8 N9 C1' C4 171.9 180.3
C1' N9 C8 N7 183.7 180.0
C1' N9 C8 H10 3.7 359.9
C1' N9 C4 N3 354.2 0.0
C1' N9 C4 C5 175.1 180.0
C1' N9 C8 C4 186.7 179.7
C8 N9 C1' H9 135.7 145.9
C8 N9 C4 N3 181.3 179.8
C8 N9 C4 C5 2.1 359.7
N9 C8 N7 C5 2.7 359.9
N9 C8 N7 C10 180.4 180.0
N7 C8 N9 H10 180.0 180.1
C1' N9 C4 C8 173.0 180.3
C4 N9 C1' H9 323.8 325.5
C4 N9 C8 N7 357.0 0.3
C4 N9 C8 H10 177.0 180.2
N3 C4 N9 C5 179.1 180.0
N9 C4 N3 C2 180.9 180.0
N9 C4 C5 C6 179.0 180.0
N7 C8 N9 C4 357.0 0.3
N9 C8 N7 H10 180.0 179.9
C8 N7 C10 C11 240.2 265.0
C8 N7 C10 H14 359.1 25.0
C8 N7 C10 H15 121.4 145.0
N9 C4 N3 C5 181.0 180.0
N3 C4 C5 C6 359.8 359.9
C4 N3 C2 N2 180.2 180.0
C4 N3 C2 N1 0.3 360.0
N9 C4 C5 N3 179.2 180.0
C8 N7 C5 C4 358.6 359.9
C5 C4 N3 C2 360.0 0.1
C2 N3 C4 C5 360.0 0.1
N2 C2 N3 N1 179.9 180.0
N3 C2 N2 H11 0.0 0.0
N3 C2 N2 H12 180.0 180.0
N3 C2 N1 H13 179.6 180.0
C8 N7 C5 C10 177.9 180.1
C5 N7 C8 H10 182.7 179.9
C8 N7 C10 C5 182.6 179.8
C10 N7 C8 H10 0.4 0.1
N7 C10 C11 C12 232.9 90.1
C11 C10 N7 H14 241.1 240.0
C11 C10 N7 H15 118.9 119.9
H14 C10 N7 H15 237.7 240.0
C16 C15 C14 H18 181.0 179.7
C16 C11 C10 H14 291.4 149.7
C16 C11 C10 H15 169.2 29.7
C16 C11 C12 H16 181.4 180.2
C15 C14 C13 H17 180.6 180.0
C8 N7 C5 C6 179.2 180.2
C5 C6 N1 H13 180.1 180.0
N3 C2 N2 N1 180.1 180.0
N2 C2 N1 H13 359.8 0.0
H11 N2 C2 H12 180.0 180.0
N3 C2 N1 N2 179.9 180.0
N1 C2 N2 H11 179.9 180.0
N1 C2 N2 H12 359.9 360.0
C6 N1 C2 H13 180.0 180.0
N7 C10 C11 H14 118.9 120.1
N7 C10 C11 H15 241.1 240.1
C10 C11 C12 C13 178.7 180.0
C10 C11 C12 H16 358.8 359.9
H14 C10 C11 H15 122.2 120.0
C12 C11 C10 H14 114.0 330.0
C12 C11 C10 H15 351.7 210.0
C13 C12 C11 H16 180.0 180.1
C11 C12 C13 H17 178.2 180.0
C4 C5 C6 N1 0.2 0.1
C2 N1 C6 H13 180.0 180.0
C4 C5 C6 O6 179.5 180.0
O6 C6 N1 H13 0.8 0.1
C14 C13 C12 H16 178.2 180.0
C12 C13 C14 H17 180.0 180.0
C11 C12 C13 H16 180.0 179.9
C14 C13 C12 H17 180.0 180.0
H1 OP2 P O5' 115.7 180.0
H1 OP2 P O1 360.0 300.0
H2 OP1 P O5' 243.8 300.1
H2 OP1 P O1 0.0 180.0
O5' C5' H3 C4' 239.0 240.0
O5' C5' H3 H4 119.5 119.9
H3 C5' C4' C3' 62.6 65.0
H3 C5' C4' O4' 312.3 309.6
C4' C5' H3 H4 240.5 239.9
H3 C5' C4' H5 188.1 187.3
O5' C5' H4 C4' 121.0 120.0
O5' C5' H4 H3 240.5 240.1
H4 C5' C4' C3' 303.0 305.0
H4 C5' C4' O4' 192.6 189.6
C4' C5' H4 H3 119.5 120.1
H4 C5' C4' H5 68.5 67.2
C5' C4' H5 C3' 236.7 237.7
C5' C4' H5 O4' 116.3 122.3
H5 C4' C5' H3 188.1 187.3
H5 C4' C5' H4 68.5 67.2
O4' C4' H5 C3' 120.5 115.4
H5 C4' C3' C2' 94.8 94.9
H5 C4' C3' H6 217.8 213.6
H5 C4' O4' C1' 272.8 281.7
O3' C3' H6 C2' 118.2 122.7
C4' C3' H6 C2' 240.8 245.4
H6 C3' C4' H5 217.8 213.6
H6 C3' C2' C1' 249.5 241.4
H6 C3' C2' F1' 2.8 0.0
H6 C3' C2' H8 131.6 122.7
H7 O3' C3' C2' 67.9 65.3
H7 O3' C3' H6 304.9 302.6
C3' C2' H8 C1' 111.8 114.7
C3' C2' H8 F1' 242.5 237.3
H8 C2' C3' H6 131.6 122.7
F1' C2' H8 C1' 229.4 237.3
H8 C2' C1' N9 232.5 261.5
H8 C2' C1' H9 4.5 23.8
O4' C1' H9 C2' 237.7 244.6
O4' C1' H9 N9 100.9 122.3
C2' C1' H9 N9 223.2 237.7
H9 C1' C2' H8 4.5 23.8
H9 C1' N9 C8 135.7 145.9
H9 C1' N9 C4 323.8 325.5
H10 C8 N9 C4 177.0 180.2
N9 C8 H10 N7 180.0 180.1
H10 C8 N7 C5 182.7 179.9
H10 C8 N7 C10 0.4 0.1
H11 N2 C2 N1 179.9 180.0
C2 N2 H11 H12 180.0 180.0
H12 N2 C2 N1 359.9 360.0
C2 N2 H12 H11 180.0 180.0
N7 C10 H14 C11 246.5 240.0
N7 C10 H14 H15 123.2 120.0
H14 C10 C11 C12 114.0 330.0
C11 C10 H14 H15 236.8 240.0
N7 C10 H15 C11 113.5 119.9
N7 C10 H15 H14 236.8 240.0
H15 C10 C11 C12 351.7 210.0
C11 C10 H15 H14 123.2 120.0
C11 C12 H16 C13 180.0 180.1
H16 C12 C13 H17 358.2 0.1
H17 C13 C12 H16 358.2 0.1
H18 C14 C13 H17 0.6 360.0
H19 C15 C14 H18 1.0 0.0
H20 C16 C15 H19 358.5 359.7
OP2 P O1 O5' 114.5 240.0
O1 P OP2 H1 360.0 300.0
OP1 P O1 O5' 243.8 120.1
O1 P O5' C5' 79.7 55.0