Atom Nomenclature for 7AX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7AX

Atom Name (V3) Atom Name (V2)
CAH C1
CAI C2
CAJ C3
CAK C4
CAL C5
CAM C6
CAY C7
CAZ C8
CBA C9
CBB C10
CBC C11
NBD N1
C0P C12
C00 C13
C0D C14
C0E C15
C0K C16
C0N C17
C0O C18
N0H N2
N0M N3
O0A O1
O0B O2
O0Q O3
O0S O4
C01 C19
C02 C20
C03 C21
C04 C22
C05 C23
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17