Atom Nomenclature for 7AU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 7AU

Atom Name (V3) Atom Name (V2)
CAY C1
CAZ C2
NBA N1
CBB C3
CBC C4
NAX N2
CAU C5
CAV C6
CAW C7
CAT C8
CAS C9
CAR C10
CAH C11
NAG N3
CBD C12
CAF C13
NAD N4
CAC C14
CAB C15
CAA C16
CL1 CL1
CAE C17
CAI C18
CAJ C19
CAK C20
CAL C21
CAO C22
CAN C23
CAM C24
CAP C25
OAQ O1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26