PDB Chemical Component 7AT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 7AT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O3' C3' 1.426 1.429
OP2 P 1.548 1.609
OP1 P 1.525 1.480
C3' C2' 1.503 1.545
C3' C4' 1.544 1.545
P O5' 1.608 1.610
O5' C5' 1.464 1.429
N27 N28 1.418 1.287
N27 N26 1.414 1.285
C5' C4' 1.518 1.529
C2' O2' 1.434 1.429
C2' C1' 1.535 1.545
N28 C24 1.371 1.368
C4' O4' 1.458 1.444
N26 C25 1.307 1.335
C24 C25 1.383 1.367
C24 C7 1.501 1.479
N8 C7 1.350 1.313
N8 N9 1.428 1.399
C7 C5 1.484 1.464
N9 C1' 1.473 1.465
N9 C4 1.313 1.363
C1' O4' 1.411 1.445
C5 C4 1.446 1.407
C5 C6 1.484 1.404
C4 N3 1.349 1.333
N6 C6 1.353 1.382
C6 N1 1.338 1.330
N3 C2 1.321 1.315
N1 C2 1.352 1.322
C2 H1 1.080 1.080
N6 H2 1.000 0.970
N6 H3 1.000 0.970
C1' H4 1.100 1.090
C2' H5 1.100 1.090
C3' H6 1.100 1.090
O3' H7 0.950 0.967
C4' H8 1.100 1.091
C5' H9 1.100 1.089
C5' H10 1.100 1.090
OP2 H12 0.950 0.967
N28 H13 1.000 0.970
C25 H14 1.079 1.080
O2' H15 0.950 0.967
P OP3   1.610
OP3 HOP3   0.966

Bond Angles for 7AT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3' C3' C4' 111.0 110.5
O3' C3' H6 111.1 110.6
OP2 P OP3   109.5
OP1 P OP3   109.5
C3' C2' O2' 109.3 110.5
C3' C2' H5 111.1 110.6
C3' C4' O4' 104.3 104.8
C4' C3' H6 109.4 110.5
C3' C4' H8 108.8 110.4
P O5' C5' 115.3 123.0
O5' P OP3   109.5
O5' C5' H9 109.0 109.5
O5' C5' H10 109.0 109.4
N27 N28 H13 128.3 126.0
N27 N26 C25 112.6 109.3
C5' C4' H8 109.1 110.4
O2' C2' H5 112.1 110.4
C2' O2' H15 109.5 114.0
C2' C1' O4' 110.8 104.8
C2' C1' H4 109.6 110.5
N28 C24 C25 114.0 105.7
C1' O4' C4' 106.6 105.3
O4' C4' H8 110.0 110.3
C24 C25 N26 104.1 106.4
N26 C25 H14 127.9 126.8
C24 C25 H14 128.0 126.8
N9 C1' O4' 108.1 110.4
N9 C1' H4 110.5 110.4
O4' C1' H4 111.4 110.4
N3 C2 H1 119.2 118.7
N1 C2 H1 119.2 118.6
H2 N6 H3 109.4 120.0
H9 C5' H10 109.5 109.5
P OP3 HOP3   114.0

Torsion Angles for 7AT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3' C3' C2' O2' 37.1 360.0
O3' C3' C2' H5 272.8 237.4
O3' C3' C4' O4' 200.1 217.4
C4' C3' O3' H6 238.1 237.3
O3' C3' C4' H8 317.5 336.2
OP1 P OP2 OP3   240.0
O5' P OP2 OP3   120.0
OP2 P OP3 HOP3   60.0
OP2 P OP1 OP3   120.0
O5' P OP1 OP3   240.0
OP1 P OP3 HOP3   180.0
O2' C2' C3' H5 124.3 122.6
C3' C2' O2' H15 180.0 294.6
C3' C2' C1' O4' 335.8 24.0
C3' C2' C1' H4 212.5 265.1
O3' C3' C4' H6 122.9 122.8
C4' C3' C2' O2' 277.9 241.3
C4' C3' C2' H5 153.6 118.7
C5' C4' C3' H8 122.3 122.3
C1' O4' C4' C3' 24.1 40.5
O4' C4' C3' H8 242.7 241.2
OP2 P O5' OP3   240.0
OP1 P O5' OP3   120.0
P O5' C5' H9 297.5 60.0
P O5' C5' H10 56.9 300.0
O5' P OP3 HOP3   300.0
C5' O5' P OP3   295.0
O5' C5' C4' H8 172.9 307.3
H9 C5' O5' H10 240.5 120.0
N27 N28 C24 C25 357.9 360.0
N26 N27 N28 H13 182.4 180.0
C24 C25 N26 N27 0.8 360.0
N27 N26 C25 H14 180.8 180.2
C5' C4' C3' H6 316.9 335.8
C3' C4' C5' H8 237.8 237.7
P O5' C5' C4' 177.2 180.0
O4' C4' C5' H8 120.8 122.3
C3' C2' O2' H5 236.4 237.3
O2' C2' C1' O4' 91.9 142.6
O2' C2' C1' H4 328.6 23.8
C2' C1' O4' C4' 359.9 319.5
N9 C1' C2' O4' 117.2 118.8
N9 C1' C2' H4 240.6 237.7
O4' C1' C2' H4 123.3 118.9
N28 C24 C25 N26 0.8 0.0
N28 C24 C25 H14 180.8 179.8
O4' C4' C3' H6 77.3 94.7
C3' C4' O4' H8 116.6 118.8
C5' C4' O4' H8 239.8 237.7
N9 C1' O4' C4' 243.7 200.7
C4' O4' C1' H4 122.2 78.4
C24 C25 N26 H14 180.0 179.7
N27 N26 C25 C24 0.8 360.0
N26 C25 C24 H14 180.0 180.3
N8 N9 C1' H4 146.1 165.8
C2' C1' N9 O4' 240.9 244.6
C2' C1' N9 H4 118.9 122.4
O4' C1' N9 H4 237.9 237.7
C3' C4' O4' C1' 24.1 40.5
C2' C1' O4' H4 237.7 241.1
C1' O4' C4' H8 267.5 281.7
N9 C1' O4' H4 121.5 122.2
C4 N3 C2 H1 182.3 180.0
C6 N1 C2 H1 179.2 180.0
N1 C2 N3 H1 180.0 180.0
N3 C2 N1 H1 180.0 180.0
C2' C1' H4 O4' 123.0 115.4
H4 C1' O4' C4' 122.2 78.4
N9 C1' H4 O4' 239.9 237.7
C3' C2' H5 O2' 122.7 122.6
H5 C2' O2' H15 303.6 57.3
H5 C2' C1' O4' 218.8 265.2
H5 C2' C1' H4 95.4 146.3
O3' C3' H6 C4' 237.2 237.3
H6 C3' C2' O2' 161.7 122.7
H6 C3' C2' H5 37.4 0.1
H6 C3' C4' O4' 77.3 94.7
H6 C3' C4' H8 194.6 213.5
H7 O3' C3' C4' 294.1 176.1
H7 O3' C3' H6 56.0 298.9
C3' C4' H8 O4' 246.3 244.6
H8 C4' C3' H6 194.6 213.5
O5' C5' H9 H10 119.2 240.0
H9 C5' C4' H8 52.6 67.3
O5' C5' H10 H9 240.9 120.0
H10 C5' C4' H8 293.1 187.4
H12 OP2 P OP3   59.9
H13 N28 C24 C25 177.9 180.0
C24 C25 H14 N26 180.0 180.3
H15 O2' C2' H5 303.6 57.3
OP3 P O5' C5'   295.0