PDB Chemical Component 7AT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 7AT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O3' |
C3' |
1.426 |
1.429 |
OP2 |
P |
1.548 |
1.609 |
OP1 |
P |
1.525 |
1.480 |
C3' |
C2' |
1.503 |
1.545 |
C3' |
C4' |
1.544 |
1.545 |
P |
O5' |
1.608 |
1.610 |
O5' |
C5' |
1.464 |
1.429 |
N27 |
N28 |
1.418 |
1.287 |
N27 |
N26 |
1.414 |
1.285 |
C5' |
C4' |
1.518 |
1.529 |
C2' |
O2' |
1.434 |
1.429 |
C2' |
C1' |
1.535 |
1.545 |
N28 |
C24 |
1.371 |
1.368 |
C4' |
O4' |
1.458 |
1.444 |
N26 |
C25 |
1.307 |
1.335 |
C24 |
C25 |
1.383 |
1.367 |
C24 |
C7 |
1.501 |
1.479 |
N8 |
C7 |
1.350 |
1.313 |
N8 |
N9 |
1.428 |
1.399 |
C7 |
C5 |
1.484 |
1.464 |
N9 |
C1' |
1.473 |
1.465 |
N9 |
C4 |
1.313 |
1.363 |
C1' |
O4' |
1.411 |
1.445 |
C5 |
C4 |
1.446 |
1.407 |
C5 |
C6 |
1.484 |
1.404 |
C4 |
N3 |
1.349 |
1.333 |
N6 |
C6 |
1.353 |
1.382 |
C6 |
N1 |
1.338 |
1.330 |
N3 |
C2 |
1.321 |
1.315 |
N1 |
C2 |
1.352 |
1.322 |
C2 |
H1 |
1.080 |
1.080 |
N6 |
H2 |
1.000 |
0.970 |
N6 |
H3 |
1.000 |
0.970 |
C1' |
H4 |
1.100 |
1.090 |
C2' |
H5 |
1.100 |
1.090 |
C3' |
H6 |
1.100 |
1.090 |
O3' |
H7 |
0.950 |
0.967 |
C4' |
H8 |
1.100 |
1.091 |
C5' |
H9 |
1.100 |
1.089 |
C5' |
H10 |
1.100 |
1.090 |
OP2 |
H12 |
0.950 |
0.967 |
N28 |
H13 |
1.000 |
0.970 |
C25 |
H14 |
1.079 |
1.080 |
O2' |
H15 |
0.950 |
0.967 |
P |
OP3 |
|
1.610 |
OP3 |
HOP3 |
|
0.966 |
Bond Angles for 7AT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
C4' |
111.0 |
110.5 |
O3' |
C3' |
H6 |
111.1 |
110.6 |
OP2 |
P |
OP3 |
|
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
C3' |
C2' |
O2' |
109.3 |
110.5 |
C3' |
C2' |
H5 |
111.1 |
110.6 |
C3' |
C4' |
O4' |
104.3 |
104.8 |
C4' |
C3' |
H6 |
109.4 |
110.5 |
C3' |
C4' |
H8 |
108.8 |
110.4 |
P |
O5' |
C5' |
115.3 |
123.0 |
O5' |
P |
OP3 |
|
109.5 |
O5' |
C5' |
H9 |
109.0 |
109.5 |
O5' |
C5' |
H10 |
109.0 |
109.4 |
N27 |
N28 |
H13 |
128.3 |
126.0 |
N27 |
N26 |
C25 |
112.6 |
109.3 |
C5' |
C4' |
H8 |
109.1 |
110.4 |
O2' |
C2' |
H5 |
112.1 |
110.4 |
C2' |
O2' |
H15 |
109.5 |
114.0 |
C2' |
C1' |
O4' |
110.8 |
104.8 |
C2' |
C1' |
H4 |
109.6 |
110.5 |
N28 |
C24 |
C25 |
114.0 |
105.7 |
C1' |
O4' |
C4' |
106.6 |
105.3 |
O4' |
C4' |
H8 |
110.0 |
110.3 |
C24 |
C25 |
N26 |
104.1 |
106.4 |
N26 |
C25 |
H14 |
127.9 |
126.8 |
C24 |
C25 |
H14 |
128.0 |
126.8 |
N9 |
C1' |
O4' |
108.1 |
110.4 |
N9 |
C1' |
H4 |
110.5 |
110.4 |
O4' |
C1' |
H4 |
111.4 |
110.4 |
N3 |
C2 |
H1 |
119.2 |
118.7 |
N1 |
C2 |
H1 |
119.2 |
118.6 |
H2 |
N6 |
H3 |
109.4 |
120.0 |
H9 |
C5' |
H10 |
109.5 |
109.5 |
P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for 7AT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
C2' |
O2' |
37.1 |
360.0 |
O3' |
C3' |
C2' |
H5 |
272.8 |
237.4 |
O3' |
C3' |
C4' |
O4' |
200.1 |
217.4 |
C4' |
C3' |
O3' |
H6 |
238.1 |
237.3 |
O3' |
C3' |
C4' |
H8 |
317.5 |
336.2 |
OP1 |
P |
OP2 |
OP3 |
|
240.0 |
O5' |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
HOP3 |
|
60.0 |
OP2 |
P |
OP1 |
OP3 |
|
120.0 |
O5' |
P |
OP1 |
OP3 |
|
240.0 |
OP1 |
P |
OP3 |
HOP3 |
|
180.0 |
O2' |
C2' |
C3' |
H5 |
124.3 |
122.6 |
C3' |
C2' |
O2' |
H15 |
180.0 |
294.6 |
C3' |
C2' |
C1' |
O4' |
335.8 |
24.0 |
C3' |
C2' |
C1' |
H4 |
212.5 |
265.1 |
O3' |
C3' |
C4' |
H6 |
122.9 |
122.8 |
C4' |
C3' |
C2' |
O2' |
277.9 |
241.3 |
C4' |
C3' |
C2' |
H5 |
153.6 |
118.7 |
C5' |
C4' |
C3' |
H8 |
122.3 |
122.3 |
C1' |
O4' |
C4' |
C3' |
24.1 |
40.5 |
O4' |
C4' |
C3' |
H8 |
242.7 |
241.2 |
OP2 |
P |
O5' |
OP3 |
|
240.0 |
OP1 |
P |
O5' |
OP3 |
|
120.0 |
P |
O5' |
C5' |
H9 |
297.5 |
60.0 |
P |
O5' |
C5' |
H10 |
56.9 |
300.0 |
O5' |
P |
OP3 |
HOP3 |
|
300.0 |
C5' |
O5' |
P |
OP3 |
|
295.0 |
O5' |
C5' |
C4' |
H8 |
172.9 |
307.3 |
H9 |
C5' |
O5' |
H10 |
240.5 |
120.0 |
N27 |
N28 |
C24 |
C25 |
357.9 |
360.0 |
N26 |
N27 |
N28 |
H13 |
182.4 |
180.0 |
C24 |
C25 |
N26 |
N27 |
0.8 |
360.0 |
N27 |
N26 |
C25 |
H14 |
180.8 |
180.2 |
C5' |
C4' |
C3' |
H6 |
316.9 |
335.8 |
C3' |
C4' |
C5' |
H8 |
237.8 |
237.7 |
P |
O5' |
C5' |
C4' |
177.2 |
180.0 |
O4' |
C4' |
C5' |
H8 |
120.8 |
122.3 |
C3' |
C2' |
O2' |
H5 |
236.4 |
237.3 |
O2' |
C2' |
C1' |
O4' |
91.9 |
142.6 |
O2' |
C2' |
C1' |
H4 |
328.6 |
23.8 |
C2' |
C1' |
O4' |
C4' |
359.9 |
319.5 |
N9 |
C1' |
C2' |
O4' |
117.2 |
118.8 |
N9 |
C1' |
C2' |
H4 |
240.6 |
237.7 |
O4' |
C1' |
C2' |
H4 |
123.3 |
118.9 |
N28 |
C24 |
C25 |
N26 |
0.8 |
0.0 |
N28 |
C24 |
C25 |
H14 |
180.8 |
179.8 |
O4' |
C4' |
C3' |
H6 |
77.3 |
94.7 |
C3' |
C4' |
O4' |
H8 |
116.6 |
118.8 |
C5' |
C4' |
O4' |
H8 |
239.8 |
237.7 |
N9 |
C1' |
O4' |
C4' |
243.7 |
200.7 |
C4' |
O4' |
C1' |
H4 |
122.2 |
78.4 |
C24 |
C25 |
N26 |
H14 |
180.0 |
179.7 |
N27 |
N26 |
C25 |
C24 |
0.8 |
360.0 |
N26 |
C25 |
C24 |
H14 |
180.0 |
180.3 |
N8 |
N9 |
C1' |
H4 |
146.1 |
165.8 |
C2' |
C1' |
N9 |
O4' |
240.9 |
244.6 |
C2' |
C1' |
N9 |
H4 |
118.9 |
122.4 |
O4' |
C1' |
N9 |
H4 |
237.9 |
237.7 |
C3' |
C4' |
O4' |
C1' |
24.1 |
40.5 |
C2' |
C1' |
O4' |
H4 |
237.7 |
241.1 |
C1' |
O4' |
C4' |
H8 |
267.5 |
281.7 |
N9 |
C1' |
O4' |
H4 |
121.5 |
122.2 |
C4 |
N3 |
C2 |
H1 |
182.3 |
180.0 |
C6 |
N1 |
C2 |
H1 |
179.2 |
180.0 |
N1 |
C2 |
N3 |
H1 |
180.0 |
180.0 |
N3 |
C2 |
N1 |
H1 |
180.0 |
180.0 |
C2' |
C1' |
H4 |
O4' |
123.0 |
115.4 |
H4 |
C1' |
O4' |
C4' |
122.2 |
78.4 |
N9 |
C1' |
H4 |
O4' |
239.9 |
237.7 |
C3' |
C2' |
H5 |
O2' |
122.7 |
122.6 |
H5 |
C2' |
O2' |
H15 |
303.6 |
57.3 |
H5 |
C2' |
C1' |
O4' |
218.8 |
265.2 |
H5 |
C2' |
C1' |
H4 |
95.4 |
146.3 |
O3' |
C3' |
H6 |
C4' |
237.2 |
237.3 |
H6 |
C3' |
C2' |
O2' |
161.7 |
122.7 |
H6 |
C3' |
C2' |
H5 |
37.4 |
0.1 |
H6 |
C3' |
C4' |
O4' |
77.3 |
94.7 |
H6 |
C3' |
C4' |
H8 |
194.6 |
213.5 |
H7 |
O3' |
C3' |
C4' |
294.1 |
176.1 |
H7 |
O3' |
C3' |
H6 |
56.0 |
298.9 |
C3' |
C4' |
H8 |
O4' |
246.3 |
244.6 |
H8 |
C4' |
C3' |
H6 |
194.6 |
213.5 |
O5' |
C5' |
H9 |
H10 |
119.2 |
240.0 |
H9 |
C5' |
C4' |
H8 |
52.6 |
67.3 |
O5' |
C5' |
H10 |
H9 |
240.9 |
120.0 |
H10 |
C5' |
C4' |
H8 |
293.1 |
187.4 |
H12 |
OP2 |
P |
OP3 |
|
59.9 |
H13 |
N28 |
C24 |
C25 |
177.9 |
180.0 |
C24 |
C25 |
H14 |
N26 |
180.0 |
180.3 |
H15 |
O2' |
C2' |
H5 |
303.6 |
57.3 |
OP3 |
P |
O5' |
C5' |
|
295.0 |