data_7AT
# 
_chem_comp.id                                    7AT 
_chem_comp.name                                  "1-(5-O-phosphono-beta-D-ribofuranosyl)-3-(1H-1,2,3-triazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H15 N8 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         7-triazolyl-8-aza-7-deazaadenosine 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-22 
_chem_comp.pdbx_modified_date                    2020-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.271 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     7AT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NFQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7AT P     P     P 0 1 N N N 65.984 28.442 27.306 5.199  -1.379 -0.706 P     7AT 1  
7AT N1    N1    N 0 1 Y N N 70.641 21.338 30.075 -4.670 1.771  -1.776 N1    7AT 2  
7AT C2    C2    C 0 1 Y N N 71.654 22.223 30.214 -3.692 2.651  -1.904 C2    7AT 3  
7AT N3    N3    N 0 1 Y N N 71.493 23.508 29.955 -2.496 2.462  -1.392 N3    7AT 4  
7AT C4    C4    C 0 1 Y N N 70.281 23.971 29.586 -2.215 1.352  -0.709 C4    7AT 5  
7AT C5    C5    C 0 1 Y N N 69.160 23.076 29.403 -3.226 0.387  -0.547 C5    7AT 6  
7AT C6    C6    C 0 1 Y N N 69.396 21.639 29.689 -4.487 0.633  -1.113 C6    7AT 7  
7AT N6    N6    N 0 1 N N N 68.435 20.689 29.617 -5.513 -0.283 -0.983 N6    7AT 8  
7AT N9    N9    N 0 1 Y N N 69.825 25.177 29.338 -1.107 0.877  -0.074 N9    7AT 9  
7AT "C1'" "C1'" C 0 1 N N R 70.605 26.426 29.344 0.183  1.567  0.007  "C1'" 7AT 10 
7AT "C2'" "C2'" C 0 1 N N R 71.322 26.496 27.989 0.423  2.091  1.440  "C2'" 7AT 11 
7AT "C3'" "C3'" C 0 1 N N S 70.318 27.300 27.211 1.938  1.887  1.666  "C3'" 7AT 12 
7AT "O3'" "O3'" O 0 1 N N N 70.899 27.989 26.106 2.582  3.141  1.901  "O3'" 7AT 13 
7AT "C4'" "C4'" C 0 1 N N R 69.801 28.295 28.272 2.434  1.263  0.343  "C4'" 7AT 14 
7AT "O4'" "O4'" O 0 1 N N N 69.705 27.503 29.492 1.265  0.640  -0.233 "O4'" 7AT 15 
7AT "C5'" "C5'" C 0 1 N N N 68.455 28.916 27.947 3.514  0.216  0.620  "C5'" 7AT 16 
7AT "O5'" "O5'" O 0 1 N N N 67.467 27.893 27.600 4.041  -0.264 -0.619 "O5'" 7AT 17 
7AT OP1   OP1   O 0 1 N N N 65.040 27.332 26.857 4.783  -2.583 0.048  OP1   7AT 18 
7AT OP2   OP2   O 0 1 N N N 66.050 29.731 26.452 5.452  -1.772 -2.246 OP2   7AT 19 
7AT N8    N8    N 0 1 Y N N 68.454 25.267 28.948 -1.391 -0.372 0.488  N8    7AT 20 
7AT C7    C7    C 0 1 Y N N 68.039 23.987 29.061 -2.636 -0.703 0.233  C7    7AT 21 
7AT C24   C24   C 0 1 Y N N 66.654 23.535 28.699 -3.317 -1.946 0.655  C24   7AT 22 
7AT N28   N28   N 0 1 Y N N 65.752 24.389 28.119 -4.181 -2.706 -0.084 N28   7AT 23 
7AT N27   N27   N 0 1 Y N N 64.618 23.568 27.896 -4.549 -3.705 0.639  N27   7AT 24 
7AT N26   N26   N 0 1 Y N N 64.950 22.300 28.426 -3.991 -3.656 1.796  N26   7AT 25 
7AT C25   C25   C 0 1 Y N N 66.167 22.256 28.901 -3.209 -2.576 1.863  C25   7AT 26 
7AT "O2'" "O2'" O 0 1 N N N 72.564 27.210 28.041 0.086  3.477  1.529  "O2'" 7AT 27 
7AT H1    H1    H 0 1 N N N 72.619 21.870 30.545 -3.884 3.562  -2.451 H1    7AT 28 
7AT H2    H2    H 0 1 N N N 68.818 19.806 29.887 -5.411 -1.045 -0.391 H2    7AT 29 
7AT H3    H3    H 0 1 N N N 67.683 20.928 30.232 -6.335 -0.165 -1.484 H3    7AT 30 
7AT H4    H4    H 0 1 N N N 71.349 26.411 30.154 0.220  2.387  -0.710 H4    7AT 31 
7AT H5    H5    H 0 1 N N N 71.440 25.490 27.561 -0.154 1.512  2.161  H5    7AT 32 
7AT H6    H6    H 0 1 N N N 69.491 26.653 26.883 2.111  1.205  2.499  H6    7AT 33 
7AT H7    H7    H 0 1 N Y N 70.226 28.480 25.649 2.265  3.605  2.688  H7    7AT 34 
7AT H8    H8    H 0 1 N N N 70.545 29.095 28.401 2.817  2.038  -0.322 H8    7AT 35 
7AT H9    H9    H 0 1 N N N 68.573 29.603 27.096 4.315  0.666  1.205  H9    7AT 36 
7AT H10   H10   H 0 1 N N N 68.098 29.476 28.824 3.080  -0.615 1.176  H10   7AT 37 
7AT H12   H12   H 0 1 N N N 65.456 29.654 25.715 6.139  -2.440 -2.374 H12   7AT 38 
7AT H13   H13   H 0 1 N N N 65.867 25.359 27.905 -4.466 -2.524 -0.993 H13   7AT 39 
7AT H14   H14   H 0 1 N N N 66.675 21.415 29.348 -2.607 -2.265 2.704  H14   7AT 40 
7AT H15   H15   H 0 1 N N N 73.200 26.704 28.532 0.217  3.858  2.408  H15   7AT 41 
7AT OP3   OP3   O 0 1 N Y N ?      ?      ?      6.558  -0.792 -0.072 OP3   7AT 42 
7AT HOP3  HOP3  H 0 0 N Y N ?      ?      ?      6.890  -0.001 -0.517 HOP3  7AT 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7AT "O3'" "C3'" SING N N 1  
7AT OP2   P     SING N N 2  
7AT OP1   P     DOUB N N 3  
7AT "C3'" "C2'" SING N N 4  
7AT "C3'" "C4'" SING N N 5  
7AT P     "O5'" SING N N 6  
7AT "O5'" "C5'" SING N N 7  
7AT N27   N28   SING Y N 8  
7AT N27   N26   DOUB Y N 9  
7AT "C5'" "C4'" SING N N 10 
7AT "C2'" "O2'" SING N N 11 
7AT "C2'" "C1'" SING N N 12 
7AT N28   C24   SING Y N 13 
7AT "C4'" "O4'" SING N N 14 
7AT N26   C25   SING Y N 15 
7AT C24   C25   DOUB Y N 16 
7AT C24   C7    SING N N 17 
7AT N8    C7    DOUB Y N 18 
7AT N8    N9    SING Y N 19 
7AT C7    C5    SING Y N 20 
7AT N9    "C1'" SING N N 21 
7AT N9    C4    SING Y N 22 
7AT "C1'" "O4'" SING N N 23 
7AT C5    C4    DOUB Y N 24 
7AT C5    C6    SING Y N 25 
7AT C4    N3    SING Y N 26 
7AT N6    C6    SING N N 27 
7AT C6    N1    DOUB Y N 28 
7AT N3    C2    DOUB Y N 29 
7AT N1    C2    SING Y N 30 
7AT C2    H1    SING N N 31 
7AT N6    H2    SING N N 32 
7AT N6    H3    SING N N 33 
7AT "C1'" H4    SING N N 34 
7AT "C2'" H5    SING N N 35 
7AT "C3'" H6    SING N N 36 
7AT "O3'" H7    SING N N 37 
7AT "C4'" H8    SING N N 38 
7AT "C5'" H9    SING N N 39 
7AT "C5'" H10   SING N N 40 
7AT OP2   H12   SING N N 41 
7AT N28   H13   SING N N 42 
7AT C25   H14   SING N N 43 
7AT "O2'" H15   SING N N 44 
7AT P     OP3   SING N N 45 
7AT OP3   HOP3  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7AT SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n2nc(c1c(ncnc12)N)c3cnnn3)C(O)C4O"                                                                                                                                              
7AT InChI            InChI                1.03  "InChI=1S/C12H15N8O7P/c13-10-6-7(4-1-16-19-17-4)18-20(11(6)15-3-14-10)12-9(22)8(21)5(27-12)2-26-28(23,24)25/h1,3,5,8-9,12,21-22H,2H2,(H2,13,14,15)(H,16,17,19)(H2,23,24,25)/t5-,8-,9-,12-/m1/s1" 
7AT InChIKey         InChI                1.03  WVKQOUHVRYIFOL-JJNLEZRASA-N                                                                                                                                                                      
7AT SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(nc(c3[nH]nnc3)c12)[C@@H]4O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]4O"                                                                                                                       
7AT SMILES           CACTVS               3.385 "Nc1ncnc2n(nc(c3[nH]nnc3)c12)[CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O"                                                                                                                             
7AT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c([nH]nn1)c2c3c(ncnc3n(n2)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)N"                                                                                                                     
7AT SMILES           "OpenEye OEToolkits" 1.7.6 "c1c([nH]nn1)c2c3c(ncnc3n(n2)C4C(C(C(O4)COP(=O)(O)O)O)O)N"                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7AT "SYSTEMATIC NAME" ACDLabs              12.01 "1-(5-O-phosphono-beta-D-ribofuranosyl)-3-(1H-1,2,3-triazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine"                                        
7AT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[4-azanyl-3-(1H-1,2,3-triazol-5-yl)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      7AT 
_pdbx_chem_comp_synonyms.name         7-triazolyl-8-aza-7-deazaadenosine 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7AT "Create component" 2013-11-22 RCSB 
7AT "Initial release"  2014-07-02 RCSB 
7AT "Modify synonyms"  2020-06-05 PDBE 
# 
