Atom Nomenclature for 79L

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 79L

Atom Name (V3) Atom Name (V2)
C29 C1
O37 O1
C30 C2
N31 N1
O34 O2
C36 C3
C32 C4
C35 C5
C33 C6
N28 N2
C27 C7
C26 C8
O39 O3
C38 C9
N25 N3
C24 C10
C40 C11
C41 C12
C48 C13
C47 C14
C44 C15
O45 O4
C46 C16
C43 C17
C42 C18
C23 C19
O49 O5
N22 N4
C8 C20
C9 C21
O21 O6
C10 C22
C11 C23
C12 C24
O13 O7
C7 C25
C6 C26
C5 C27
C4 C28
C3 C29
C2 C30
C1 C31
H1 H1
H2 H2
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45