Atom Nomenclature for 796

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 796

Atom Name (V3) Atom Name (V2)
O23 O23
C22 C22
C18 C18
S1 S1
C17 C17
C16 C16
C15 C15
C3 C3
C2 C2
N4 N4
C5 C5
N9 N9
C10 C10
N6 N6
C1 C1
N24 N24
C25 C25
C27 C27
N43 N43
C28 C28
C30 C30
C37 C37
C36 C36
C35 C35
CL4 CL4
C34 C34
C33 C33
CL2 CL2
H17 H17
H16 H16
H2 H2
HN9 HN9
H101 1H10
H102 2H10
H103 3H10
H1 H1
HN24 HN24
H25 H25
H271 1H27
H272 2H27
H431 1H43
H432 2H43
H281 1H28
H282 2H28
H37 H37
H36 H36
H34 H34