Atom Nomenclature for 794

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 794

Atom Name (V3) Atom Name (V2)
O35 O35
C30 C30
O36 O36
C19 C19
O34 O34
N18 N18
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C31 C31
O32 O32
O33 O33
C11 C11
C12 C12
C13 C13
C14 C14
C2 C2
C1 C1
C6 C6
C5 C5
C4 C4
C3 C3
H35 H35
H21 H21
H22 H22
H23 H23
H24 H24
H33 H33
H12 H12
H13 H13
H14 H14
H6 H6
H5 H5
H4 H4
H3 H3