Atom Nomenclature for 793

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 793

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C7 C7
C8 C8
N1 N1
C9 C9
C10 C10
O1 O1
O2 O2
N2 N2
N3 N3
H1 H1
H1A H1A
H1B H1B
H2 H2
H4 H4
H5 H5
H6 H6
H14 H14
H15 H15
H16 H16
H17 H17
H7 H7
H8 H8
HN2 HN2
H151 H151