Atom Nomenclature for 790

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 790

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
N5 N5
C6 C6
C13 C13
C14 C14
C15 C15
C16 C16
O17 O17
P18 P18
O19 O19
O20 O20
O21 O21
H11 1H1
H12 2H1
H21A 1H2
H22 2H2
HN5 HN5
H61 1H6
H62 2H6
H13 H13
H14 H14
H15 H15
H19 H19
H21 H21