PDB Chemical Component 78Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 78Z
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C10 |
C9 |
1.525 |
1.508 |
N5 |
C9 |
1.351 |
1.316 |
N5 |
C11 |
1.360 |
1.338 |
C9 |
C8 |
1.433 |
1.392 |
C11 |
N4 |
1.398 |
1.329 |
C11 |
N2 |
1.299 |
1.366 |
N4 |
C12 |
1.354 |
1.327 |
C8 |
C7 |
1.422 |
1.382 |
F5 |
C13 |
1.339 |
1.399 |
N2 |
C7 |
1.371 |
1.366 |
N2 |
N3 |
1.377 |
1.401 |
C7 |
N1 |
1.425 |
1.378 |
C12 |
C13 |
1.519 |
1.506 |
C12 |
N3 |
1.331 |
1.311 |
C13 |
C14 |
1.510 |
1.530 |
C13 |
F4 |
1.335 |
1.400 |
N1 |
C2 |
1.427 |
1.398 |
C2 |
C3 |
1.410 |
1.393 |
C2 |
C1 |
1.383 |
1.389 |
C3 |
C4 |
1.411 |
1.385 |
C1 |
N6 |
1.322 |
1.318 |
C4 |
C5 |
1.390 |
1.383 |
N6 |
C5 |
1.318 |
1.319 |
C5 |
C16 |
1.518 |
1.507 |
F2 |
C16 |
1.334 |
1.399 |
C16 |
F1 |
1.343 |
1.398 |
C16 |
F3 |
1.340 |
1.399 |
C10 |
H102 |
1.100 |
1.090 |
C10 |
H103 |
1.100 |
1.090 |
C10 |
H101 |
1.100 |
1.090 |
C8 |
H81 |
1.080 |
1.081 |
C14 |
H142 |
1.100 |
1.090 |
C14 |
H143 |
1.100 |
1.090 |
C14 |
H141 |
1.100 |
1.090 |
N1 |
H11 |
1.000 |
0.971 |
C3 |
H31 |
1.080 |
1.080 |
C4 |
H41 |
1.081 |
1.080 |
C1 |
H12 |
1.080 |
1.080 |
Bond Angles for 78Z
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
C9 |
C8 |
120.9 |
119.7 |
C9 |
C10 |
H102 |
109.5 |
109.5 |
C9 |
C10 |
H103 |
109.5 |
109.4 |
C9 |
C10 |
H101 |
109.5 |
109.5 |
N5 |
C9 |
C8 |
120.1 |
120.5 |
N5 |
C11 |
N4 |
131.3 |
132.4 |
N5 |
C11 |
N2 |
122.1 |
120.4 |
C9 |
C8 |
C7 |
116.2 |
119.0 |
C9 |
C8 |
H81 |
121.9 |
120.5 |
N4 |
C11 |
N2 |
106.6 |
107.2 |
C11 |
N4 |
C12 |
108.4 |
109.7 |
C11 |
N2 |
C7 |
121.6 |
120.2 |
C11 |
N2 |
N3 |
109.4 |
106.4 |
N4 |
C12 |
C13 |
126.5 |
125.2 |
N4 |
C12 |
N3 |
107.0 |
109.6 |
N2 |
C7 |
C8 |
119.6 |
118.6 |
C8 |
C7 |
N1 |
125.4 |
120.7 |
C7 |
C8 |
H81 |
121.9 |
120.4 |
N2 |
C7 |
N1 |
115.0 |
120.7 |
C7 |
N1 |
C2 |
125.9 |
120.0 |
C7 |
N1 |
H11 |
117.0 |
120.0 |
N3 |
C12 |
C13 |
126.6 |
125.2 |
C12 |
C13 |
C14 |
107.1 |
109.5 |
C12 |
C13 |
F4 |
110.1 |
109.5 |
C14 |
C13 |
F4 |
109.3 |
109.5 |
C13 |
C14 |
H142 |
109.5 |
109.4 |
C13 |
C14 |
H143 |
109.5 |
109.5 |
C13 |
C14 |
H141 |
109.5 |
109.4 |
N1 |
C2 |
C3 |
123.7 |
120.5 |
N1 |
C2 |
C1 |
116.9 |
120.5 |
C2 |
N1 |
H11 |
117.1 |
119.9 |
C3 |
C2 |
C1 |
119.4 |
119.0 |
C2 |
C3 |
C4 |
117.7 |
118.4 |
C2 |
C3 |
H31 |
121.1 |
120.8 |
C2 |
C1 |
N6 |
120.3 |
120.7 |
C2 |
C1 |
H12 |
119.9 |
119.7 |
C3 |
C4 |
C5 |
119.0 |
119.2 |
C4 |
C3 |
H31 |
121.1 |
120.8 |
C3 |
C4 |
H41 |
120.5 |
120.4 |
C4 |
C5 |
C16 |
121.3 |
119.5 |
C5 |
C4 |
H41 |
120.5 |
120.3 |
N6 |
C5 |
C16 |
118.3 |
119.6 |
C5 |
C16 |
F1 |
110.3 |
109.5 |
C5 |
C16 |
F3 |
108.3 |
109.5 |
F2 |
C16 |
F3 |
109.6 |
109.5 |
F1 |
C16 |
F3 |
110.1 |
109.5 |
H102 |
C10 |
H103 |
109.5 |
109.4 |
H102 |
C10 |
H101 |
109.5 |
109.5 |
H103 |
C10 |
H101 |
109.5 |
109.5 |
H142 |
C14 |
H143 |
109.5 |
109.4 |
H142 |
C14 |
H141 |
109.5 |
109.5 |
H143 |
C14 |
H141 |
109.4 |
109.5 |
Torsion Angles for 78Z
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N5 |
C9 |
C10 |
C8 |
180.1 |
180.3 |
C10 |
C9 |
C8 |
C7 |
179.5 |
179.7 |
C10 |
C9 |
C8 |
H81 |
359.5 |
0.0 |
H102 |
C10 |
C9 |
H103 |
240.0 |
240.1 |
H102 |
C10 |
C9 |
H101 |
120.0 |
120.1 |
H103 |
C10 |
C9 |
H101 |
240.0 |
240.0 |
C10 |
C9 |
N5 |
C8 |
179.9 |
179.7 |
N5 |
C9 |
C10 |
H102 |
0.0 |
270.3 |
N5 |
C9 |
C10 |
H103 |
120.0 |
30.2 |
N5 |
C9 |
C10 |
H101 |
240.0 |
150.2 |
N5 |
C9 |
C8 |
C7 |
359.5 |
359.5 |
N5 |
C9 |
C8 |
H81 |
179.5 |
179.8 |
C11 |
N5 |
C9 |
C8 |
0.0 |
0.2 |
N4 |
C11 |
N5 |
N2 |
179.9 |
180.0 |
N5 |
C11 |
N4 |
C12 |
180.0 |
180.0 |
N5 |
C11 |
N2 |
C7 |
0.3 |
360.0 |
N5 |
C11 |
N2 |
N3 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
H102 |
180.0 |
90.0 |
C8 |
C9 |
C10 |
H103 |
300.0 |
210.0 |
C8 |
C9 |
C10 |
H101 |
60.0 |
330.0 |
N2 |
C7 |
C8 |
C9 |
0.9 |
0.6 |
C9 |
C8 |
C7 |
N1 |
179.4 |
180.3 |
C7 |
C8 |
C9 |
H81 |
180.0 |
179.7 |
N5 |
C11 |
N4 |
N2 |
180.1 |
180.0 |
N4 |
C11 |
N2 |
C7 |
180.4 |
180.0 |
N4 |
C11 |
N2 |
N3 |
0.1 |
0.0 |
C11 |
N4 |
C12 |
C13 |
179.7 |
180.0 |
C11 |
N4 |
C12 |
N3 |
0.2 |
360.0 |
N5 |
C11 |
N2 |
N4 |
179.9 |
180.0 |
N2 |
C11 |
N4 |
C12 |
359.9 |
360.0 |
C11 |
N2 |
C7 |
C8 |
359.2 |
359.7 |
C11 |
N2 |
C7 |
N1 |
180.5 |
180.0 |
C12 |
N4 |
C11 |
N2 |
359.9 |
360.0 |
N3 |
C12 |
N4 |
C13 |
180.5 |
180.0 |
N4 |
C12 |
C13 |
C14 |
295.9 |
0.0 |
N4 |
C12 |
C13 |
F4 |
177.2 |
120.1 |
C9 |
C8 |
C7 |
H81 |
180.0 |
180.3 |
N2 |
C7 |
C8 |
N1 |
181.4 |
180.3 |
C8 |
C7 |
N1 |
C2 |
25.8 |
123.4 |
C8 |
C7 |
N1 |
H11 |
205.8 |
303.4 |
F5 |
C13 |
C14 |
H142 |
180.0 |
180.0 |
F5 |
C13 |
C14 |
H143 |
300.0 |
300.0 |
F5 |
C13 |
C14 |
H141 |
60.0 |
60.0 |
C9 |
C8 |
C7 |
N2 |
0.9 |
0.6 |
C11 |
N2 |
C7 |
N3 |
179.6 |
180.0 |
C8 |
C7 |
N2 |
N1 |
178.7 |
179.7 |
N2 |
C7 |
C8 |
H81 |
180.9 |
180.3 |
N2 |
C7 |
N1 |
C2 |
204.4 |
303.1 |
N2 |
C7 |
N1 |
H11 |
24.4 |
123.1 |
C11 |
N2 |
N3 |
C7 |
180.3 |
180.0 |
N2 |
N3 |
C12 |
C13 |
180.4 |
180.1 |
N2 |
C7 |
N1 |
C8 |
178.6 |
179.7 |
N1 |
C7 |
C8 |
H81 |
359.4 |
360.0 |
C7 |
N1 |
C2 |
C3 |
36.7 |
352.4 |
C7 |
N1 |
C2 |
C1 |
215.4 |
172.1 |
C2 |
N1 |
C7 |
H11 |
180.0 |
180.1 |
N4 |
C12 |
C13 |
N3 |
180.6 |
180.0 |
C14 |
C13 |
C12 |
F4 |
118.7 |
240.0 |
C12 |
C13 |
C14 |
H142 |
299.7 |
60.0 |
C12 |
C13 |
C14 |
H143 |
59.7 |
180.0 |
C12 |
C13 |
C14 |
H141 |
179.7 |
300.0 |
C11 |
N2 |
N3 |
C12 |
0.0 |
360.0 |
N4 |
C12 |
N3 |
C13 |
179.5 |
180.0 |
N3 |
C12 |
C13 |
C14 |
115.4 |
180.0 |
N3 |
C12 |
C13 |
F4 |
356.7 |
300.0 |
C12 |
C13 |
C14 |
F4 |
240.8 |
120.0 |
H142 |
C14 |
C13 |
H143 |
240.0 |
240.0 |
H142 |
C14 |
C13 |
H141 |
120.0 |
120.0 |
H143 |
C14 |
C13 |
H141 |
240.0 |
240.0 |
C12 |
C13 |
F4 |
C14 |
117.3 |
240.0 |
F4 |
C13 |
C14 |
H142 |
58.9 |
300.0 |
F4 |
C13 |
C14 |
H143 |
178.9 |
59.9 |
F4 |
C13 |
C14 |
H141 |
298.9 |
180.0 |
C7 |
N1 |
C2 |
H11 |
180.0 |
179.9 |
C3 |
C2 |
N1 |
C1 |
181.3 |
180.2 |
N1 |
C2 |
C3 |
C4 |
179.6 |
180.0 |
N1 |
C2 |
C3 |
H31 |
359.6 |
0.0 |
N1 |
C2 |
C1 |
N6 |
180.7 |
179.7 |
N1 |
C2 |
C1 |
H12 |
0.7 |
0.0 |
N1 |
C2 |
C3 |
C1 |
178.6 |
179.8 |
C3 |
C2 |
N1 |
H11 |
216.7 |
172.4 |
C3 |
C2 |
C1 |
N6 |
359.5 |
359.5 |
C3 |
C2 |
C1 |
H12 |
179.5 |
179.8 |
C2 |
C3 |
C4 |
C5 |
359.3 |
0.0 |
C4 |
C3 |
C2 |
H31 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
H41 |
179.3 |
180.0 |
N1 |
C2 |
C1 |
C3 |
181.3 |
180.2 |
C1 |
C2 |
N1 |
H11 |
35.4 |
352.2 |
C1 |
C2 |
C3 |
C4 |
0.9 |
0.2 |
C1 |
C2 |
C3 |
H31 |
180.9 |
180.2 |
C4 |
C3 |
C2 |
C1 |
0.9 |
0.2 |
C2 |
C3 |
C4 |
H31 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C16 |
180.3 |
180.0 |
C5 |
C4 |
C3 |
H41 |
180.0 |
180.0 |
C2 |
C1 |
N6 |
H12 |
180.0 |
180.3 |
C1 |
N6 |
C5 |
C16 |
180.2 |
179.7 |
C5 |
C4 |
C3 |
H31 |
179.3 |
180.0 |
C3 |
C4 |
C5 |
H41 |
180.0 |
180.0 |
N6 |
C5 |
C4 |
C16 |
179.8 |
180.0 |
C4 |
C5 |
C16 |
F1 |
7.0 |
90.0 |
C4 |
C5 |
C16 |
F3 |
127.5 |
330.0 |
C2 |
C1 |
N6 |
C5 |
359.8 |
0.5 |
C4 |
C5 |
N6 |
C16 |
180.2 |
180.0 |
N6 |
C5 |
C4 |
H41 |
180.0 |
180.0 |
N6 |
C5 |
C16 |
F1 |
187.2 |
270.0 |
N6 |
C5 |
C16 |
F3 |
307.7 |
150.0 |
C16 |
C5 |
C4 |
H41 |
0.3 |
360.0 |
F2 |
C16 |
C5 |
F3 |
118.9 |
240.0 |
F1 |
C16 |
C5 |
F3 |
239.5 |
120.0 |
C5 |
C16 |
F2 |
F3 |
241.9 |
120.0 |
F1 |
C16 |
F2 |
F3 |
121.1 |
240.0 |
C5 |
C16 |
F1 |
F3 |
119.4 |
240.0 |
F2 |
C16 |
F1 |
F3 |
239.2 |
120.0 |
C5 |
C16 |
F3 |
F1 |
239.4 |
120.0 |
H102 |
C10 |
C9 |
C8 |
180.0 |
90.0 |
C9 |
C10 |
H102 |
H103 |
120.0 |
120.0 |
C9 |
C10 |
H102 |
H101 |
240.0 |
239.9 |
H103 |
C10 |
H102 |
H101 |
120.0 |
120.0 |
H103 |
C10 |
C9 |
C8 |
300.0 |
210.0 |
C9 |
C10 |
H103 |
H102 |
240.0 |
240.0 |
C9 |
C10 |
H103 |
H101 |
120.0 |
120.0 |
H102 |
C10 |
H103 |
H101 |
240.0 |
240.0 |
H101 |
C10 |
C9 |
C8 |
60.0 |
330.0 |
C9 |
C10 |
H101 |
H102 |
120.0 |
120.1 |
C9 |
C10 |
H101 |
H103 |
240.0 |
240.0 |
H102 |
C10 |
H101 |
H103 |
120.0 |
120.0 |
C9 |
C8 |
H81 |
C7 |
180.0 |
179.7 |
H81 |
C8 |
C7 |
N1 |
359.4 |
360.0 |
H142 |
C14 |
C13 |
F4 |
58.9 |
300.0 |
C13 |
C14 |
H142 |
H143 |
120.0 |
120.0 |
C13 |
C14 |
H142 |
H141 |
240.0 |
240.0 |
H143 |
C14 |
H142 |
H141 |
119.9 |
120.1 |
H143 |
C14 |
C13 |
F4 |
178.9 |
59.9 |
C13 |
C14 |
H143 |
H142 |
239.9 |
240.0 |
C13 |
C14 |
H143 |
H141 |
120.0 |
120.0 |
H142 |
C14 |
H143 |
H141 |
240.0 |
240.0 |
H141 |
C14 |
C13 |
F4 |
298.9 |
180.0 |
C13 |
C14 |
H141 |
H142 |
120.0 |
120.0 |
C13 |
C14 |
H141 |
H143 |
240.0 |
240.0 |
H142 |
C14 |
H141 |
H143 |
120.0 |
120.0 |
C7 |
N1 |
H11 |
C2 |
180.0 |
180.1 |
H11 |
N1 |
C2 |
C3 |
216.7 |
172.4 |
H11 |
N1 |
C2 |
C1 |
35.4 |
352.2 |
H31 |
C3 |
C2 |
C1 |
180.9 |
180.2 |
C2 |
C3 |
H31 |
C4 |
180.0 |
180.0 |
H31 |
C3 |
C4 |
C5 |
179.3 |
180.0 |
H31 |
C3 |
C4 |
H41 |
359.3 |
0.0 |
C3 |
C4 |
H41 |
C5 |
180.0 |
180.0 |
H41 |
C4 |
C3 |
H31 |
359.3 |
0.0 |
H41 |
C4 |
C5 |
C16 |
0.3 |
360.0 |
C2 |
C1 |
H12 |
N6 |
180.0 |
179.7 |