PDB Chemical Component 78Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 78Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C2 |
1.493 |
1.507 |
| O |
C |
1.225 |
1.216 |
| C |
C1 |
1.435 |
1.478 |
| C |
N |
1.319 |
1.348 |
| C2 |
C1 |
1.422 |
1.406 |
| C2 |
N3 |
1.323 |
1.313 |
| C1 |
N1 |
1.335 |
1.320 |
| N3 |
N2 |
1.344 |
1.401 |
| N1 |
N2 |
1.334 |
1.287 |
| N2 |
C4 |
1.428 |
1.401 |
| C4 |
C5 |
1.392 |
1.388 |
| C4 |
C9 |
1.393 |
1.388 |
| C5 |
C6 |
1.386 |
1.382 |
| C9 |
C8 |
1.385 |
1.382 |
| C6 |
C7 |
1.384 |
1.382 |
| C8 |
C7 |
1.384 |
1.383 |
| C5 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.080 |
| C7 |
H3 |
1.080 |
1.080 |
| C8 |
H4 |
1.080 |
1.080 |
| C9 |
H5 |
1.080 |
1.079 |
| N |
H6 |
1.000 |
0.969 |
| N |
H7 |
1.000 |
0.971 |
| C3 |
H8 |
1.100 |
1.090 |
| C3 |
H9 |
1.100 |
1.089 |
| C3 |
H10 |
1.101 |
1.090 |
Bond Angles for 78Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
C1 |
120.5 |
120.0 |
| O |
C |
N |
123.8 |
120.0 |
| N |
C |
C1 |
115.7 |
120.0 |
| C |
N |
H6 |
120.0 |
120.0 |
| C |
N |
H7 |
120.0 |
120.0 |
| N2 |
C4 |
C9 |
119.7 |
120.1 |
| C5 |
C4 |
C9 |
120.3 |
119.9 |
| C4 |
C5 |
C6 |
119.4 |
119.9 |
| C4 |
C5 |
H1 |
120.3 |
120.1 |
| C4 |
C9 |
C8 |
119.5 |
119.9 |
| C4 |
C9 |
H5 |
120.3 |
120.1 |
| C5 |
C6 |
C7 |
120.4 |
120.1 |
| C6 |
C5 |
H1 |
120.3 |
120.0 |
| C5 |
C6 |
H2 |
119.8 |
119.9 |
| C9 |
C8 |
H4 |
119.8 |
119.9 |
| C7 |
C6 |
H2 |
119.8 |
120.0 |
| C6 |
C7 |
H3 |
120.0 |
120.0 |
| C8 |
C7 |
H3 |
120.0 |
119.9 |
| H6 |
N |
H7 |
120.0 |
120.0 |
| H8 |
C3 |
H9 |
109.5 |
109.4 |
| H8 |
C3 |
H10 |
109.5 |
109.4 |
| H9 |
C3 |
H10 |
109.4 |
109.5 |
Torsion Angles for 78Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C |
O |
C1 |
178.5 |
180.1 |
| O |
C |
N |
H6 |
0.0 |
360.0 |
| O |
C |
N |
H7 |
180.0 |
180.0 |
| O |
C |
C1 |
N |
178.6 |
180.1 |
| C1 |
C |
N |
H6 |
178.6 |
180.1 |
| C1 |
C |
N |
H7 |
358.5 |
0.1 |
| O |
C |
N |
C1 |
181.4 |
179.9 |
| H6 |
N |
C |
H7 |
180.0 |
180.0 |
| N1 |
N2 |
C4 |
C9 |
5.6 |
180.3 |
| C5 |
C4 |
N2 |
C9 |
175.0 |
179.8 |
| N2 |
C4 |
C5 |
H1 |
5.9 |
0.2 |
| N2 |
C4 |
C9 |
C8 |
173.6 |
179.8 |
| N2 |
C4 |
C9 |
H5 |
353.6 |
359.7 |
| N2 |
C4 |
C5 |
C9 |
185.0 |
180.2 |
| C5 |
C4 |
C9 |
C8 |
358.6 |
360.0 |
| C5 |
C4 |
C9 |
H5 |
178.6 |
179.9 |
| C4 |
C5 |
C6 |
C7 |
0.1 |
360.0 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H2 |
180.1 |
180.0 |
| C9 |
C4 |
C5 |
C6 |
0.9 |
0.0 |
| C9 |
C4 |
C5 |
H1 |
181.0 |
179.9 |
| C4 |
C9 |
C8 |
H4 |
180.8 |
180.1 |
| C6 |
C5 |
C4 |
C9 |
0.9 |
0.0 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
179.9 |
| C7 |
C6 |
C5 |
H2 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
H3 |
179.3 |
180.0 |
| C4 |
C9 |
C8 |
H5 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
H3 |
180.3 |
180.1 |
| C7 |
C6 |
C5 |
H1 |
180.1 |
180.1 |
| C5 |
C6 |
C7 |
H2 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
H3 |
180.0 |
180.0 |
| C4 |
C9 |
C8 |
C7 |
0.8 |
360.0 |
| C8 |
C7 |
C6 |
H2 |
179.2 |
179.9 |
| C6 |
C7 |
C8 |
H3 |
180.0 |
180.0 |
| H1 |
C5 |
C4 |
C9 |
181.0 |
179.9 |
| C4 |
C5 |
H1 |
C6 |
180.0 |
180.1 |
| H1 |
C5 |
C6 |
C7 |
180.1 |
180.1 |
| H1 |
C5 |
C6 |
H2 |
0.1 |
0.1 |
| C5 |
C6 |
H2 |
C7 |
180.0 |
179.9 |
| H2 |
C6 |
C5 |
H1 |
0.1 |
0.1 |
| H2 |
C6 |
C7 |
H3 |
359.3 |
359.9 |
| H3 |
C7 |
C6 |
H2 |
359.3 |
359.9 |
| H4 |
C8 |
C7 |
H3 |
0.2 |
359.9 |
| C4 |
C9 |
H5 |
C8 |
180.0 |
180.1 |
| H5 |
C9 |
C8 |
H4 |
0.8 |
0.2 |
| H6 |
N |
C |
C1 |
178.6 |
180.1 |
| C |
N |
H6 |
H7 |
180.0 |
180.0 |
| H7 |
N |
C |
C1 |
358.5 |
0.1 |
| C |
N |
H7 |
H6 |
180.0 |
180.0 |
| H9 |
C3 |
H8 |
H10 |
120.0 |
120.0 |
| H8 |
C3 |
H9 |
H10 |
240.0 |
240.1 |
| H8 |
C3 |
H10 |
H9 |
120.0 |
119.9 |