PDB Chemical Component 78V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 78V
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C16 |
N7 |
1.337 |
1.321 |
C16 |
N6 |
1.335 |
1.316 |
N7 |
C17 |
1.350 |
1.330 |
N6 |
C15 |
1.337 |
1.329 |
C17 |
N8 |
1.335 |
1.384 |
C17 |
C14 |
1.408 |
1.404 |
C15 |
C14 |
1.385 |
1.406 |
C15 |
N4 |
1.374 |
1.372 |
C14 |
N5 |
1.386 |
1.355 |
O3 |
C11 |
1.423 |
1.429 |
O4 |
C12 |
1.422 |
1.429 |
C10 |
N4 |
1.460 |
1.465 |
C10 |
C11 |
1.524 |
1.545 |
C10 |
O2 |
1.405 |
1.444 |
N4 |
C13 |
1.370 |
1.364 |
C11 |
C12 |
1.540 |
1.545 |
O2 |
C9 |
1.440 |
1.444 |
C9 |
C12 |
1.540 |
1.545 |
C9 |
C8 |
1.519 |
1.530 |
N5 |
C13 |
1.312 |
1.301 |
C8 |
N3 |
1.464 |
1.469 |
N3 |
C7 |
1.464 |
1.469 |
C7 |
C6 |
1.512 |
1.531 |
C6 |
N2 |
1.454 |
1.465 |
N2 |
C4 |
1.343 |
1.375 |
N1 |
C4 |
1.329 |
1.327 |
N1 |
C5 |
1.356 |
1.332 |
C4 |
C3 |
1.410 |
1.410 |
O1 |
C5 |
1.229 |
1.220 |
C5 |
N |
1.396 |
1.345 |
C3 |
C2 |
1.336 |
1.354 |
N |
C2 |
1.359 |
1.362 |
N |
C1 |
1.465 |
1.465 |
C |
O |
1.420 |
1.428 |
C1 |
O |
1.400 |
1.429 |
C6 |
H8 |
1.100 |
1.090 |
C6 |
H9 |
1.100 |
1.090 |
N3 |
H12 |
1.000 |
1.009 |
C2 |
H5 |
1.080 |
1.080 |
C |
H1 |
1.101 |
1.091 |
C |
H |
1.100 |
1.090 |
C |
H2 |
1.100 |
1.090 |
C1 |
H4 |
1.100 |
1.090 |
C1 |
H3 |
1.100 |
1.090 |
C3 |
H6 |
1.080 |
1.080 |
N2 |
H7 |
1.000 |
0.971 |
C7 |
H11 |
1.100 |
1.090 |
C7 |
H10 |
1.100 |
1.089 |
C8 |
H13 |
1.100 |
1.090 |
C8 |
H14 |
1.100 |
1.090 |
C9 |
H15 |
1.100 |
1.090 |
C12 |
H19 |
1.100 |
1.091 |
O4 |
H20 |
0.950 |
0.967 |
C11 |
H17 |
1.100 |
1.090 |
O3 |
H18 |
0.950 |
0.966 |
C10 |
H16 |
1.100 |
1.090 |
C16 |
H22 |
1.080 |
1.079 |
N8 |
H23 |
1.000 |
0.970 |
N8 |
H24 |
1.000 |
0.969 |
C13 |
H21 |
1.080 |
1.079 |
Bond Angles for 78V
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
N7 |
C17 |
118.8 |
121.2 |
N7 |
C16 |
H22 |
115.6 |
118.8 |
N7 |
C17 |
N8 |
118.6 |
120.8 |
N7 |
C17 |
C14 |
117.7 |
118.5 |
N6 |
C15 |
C14 |
126.8 |
119.1 |
N8 |
C17 |
C14 |
123.7 |
120.8 |
C17 |
N8 |
H23 |
109.5 |
120.0 |
C17 |
N8 |
H24 |
109.5 |
120.0 |
C15 |
C14 |
C17 |
116.8 |
118.2 |
C17 |
C14 |
N5 |
132.3 |
134.7 |
C15 |
C14 |
N5 |
110.8 |
107.1 |
C15 |
N4 |
C13 |
105.7 |
107.4 |
C14 |
N5 |
C13 |
103.7 |
109.5 |
O3 |
C11 |
H17 |
111.8 |
110.5 |
O4 |
C12 |
H19 |
111.6 |
110.5 |
C10 |
N4 |
C13 |
127.9 |
126.3 |
C10 |
C11 |
H17 |
110.3 |
110.5 |
N4 |
C13 |
N5 |
114.0 |
110.0 |
N4 |
C13 |
H21 |
123.0 |
125.0 |
C11 |
C12 |
H19 |
109.9 |
110.5 |
O2 |
C9 |
C12 |
105.9 |
104.8 |
O2 |
C9 |
C8 |
109.3 |
110.4 |
O2 |
C9 |
H15 |
108.2 |
110.4 |
C12 |
C9 |
H15 |
107.0 |
110.4 |
C9 |
C12 |
H19 |
109.8 |
110.5 |
C9 |
C8 |
H13 |
108.9 |
109.5 |
C9 |
C8 |
H14 |
108.9 |
109.5 |
N5 |
C13 |
H21 |
123.0 |
125.0 |
C8 |
N3 |
H12 |
108.0 |
111.0 |
C7 |
N3 |
H12 |
108.0 |
111.0 |
N3 |
C7 |
H11 |
109.1 |
109.5 |
N3 |
C7 |
H10 |
109.1 |
109.5 |
C7 |
C6 |
H8 |
109.3 |
109.5 |
C7 |
C6 |
H9 |
109.3 |
109.5 |
C6 |
N2 |
C4 |
123.8 |
120.0 |
N2 |
C6 |
H8 |
109.3 |
109.5 |
N2 |
C6 |
H9 |
109.3 |
109.5 |
C6 |
N2 |
H7 |
118.1 |
120.0 |
C5 |
N1 |
C4 |
120.1 |
120.7 |
N1 |
C4 |
C3 |
122.6 |
119.6 |
C4 |
C3 |
C2 |
116.5 |
119.0 |
C4 |
C3 |
H6 |
121.8 |
120.5 |
C5 |
N |
C2 |
120.1 |
120.4 |
C5 |
N |
C1 |
123.1 |
119.8 |
C3 |
C2 |
H5 |
119.0 |
120.4 |
C2 |
N |
C1 |
116.4 |
119.8 |
N |
C2 |
H5 |
119.0 |
120.4 |
N |
C1 |
O |
111.5 |
109.5 |
N |
C1 |
H4 |
109.0 |
109.5 |
N |
C1 |
H3 |
108.9 |
109.4 |
O |
C |
H1 |
109.5 |
109.4 |
O |
C |
H |
109.5 |
109.5 |
O |
C |
H2 |
109.4 |
109.5 |
H8 |
C6 |
H9 |
109.4 |
109.5 |
H1 |
C |
H |
109.5 |
109.5 |
H1 |
C |
H2 |
109.5 |
109.4 |
H |
C |
H2 |
109.5 |
109.5 |
H4 |
C1 |
H3 |
109.5 |
109.5 |
H11 |
C7 |
H10 |
109.5 |
109.5 |
H13 |
C8 |
H14 |
109.4 |
109.5 |
H23 |
N8 |
H24 |
109.5 |
120.0 |
Torsion Angles for 78V
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
N7 |
C17 |
N8 |
179.1 |
180.0 |
C16 |
N7 |
C17 |
C14 |
359.5 |
0.0 |
C16 |
N6 |
C15 |
C14 |
359.5 |
360.0 |
C17 |
N7 |
C16 |
H22 |
180.1 |
180.0 |
N8 |
C17 |
N7 |
C14 |
179.6 |
180.0 |
N7 |
C17 |
N8 |
H23 |
360.0 |
360.0 |
N7 |
C17 |
N8 |
H24 |
120.0 |
180.0 |
C15 |
C14 |
C17 |
N7 |
0.4 |
359.9 |
N7 |
C17 |
C14 |
N5 |
181.3 |
180.0 |
N6 |
C15 |
C14 |
C17 |
0.1 |
0.1 |
N6 |
C15 |
C14 |
N5 |
179.4 |
180.0 |
N6 |
C15 |
N4 |
C13 |
180.6 |
180.0 |
N7 |
C17 |
N8 |
C14 |
180.5 |
180.0 |
C15 |
C14 |
C17 |
N8 |
180.8 |
180.0 |
N8 |
C17 |
C14 |
N5 |
1.8 |
0.0 |
H23 |
N8 |
C17 |
H24 |
240.0 |
180.0 |
N7 |
C17 |
C14 |
N8 |
179.5 |
180.0 |
C14 |
C17 |
N8 |
H23 |
179.5 |
179.9 |
C14 |
C17 |
N8 |
H24 |
299.5 |
360.0 |
C15 |
C14 |
C17 |
N5 |
179.1 |
180.0 |
C17 |
C14 |
N5 |
C13 |
179.0 |
180.0 |
N7 |
C17 |
C14 |
C15 |
0.4 |
359.9 |
N8 |
C17 |
C14 |
C15 |
180.8 |
180.0 |
C17 |
C14 |
C15 |
N5 |
180.7 |
180.0 |
C14 |
C15 |
N4 |
C13 |
359.8 |
0.1 |
C15 |
C14 |
N5 |
C13 |
359.9 |
0.0 |
C10 |
N4 |
C15 |
C13 |
178.8 |
179.7 |
C15 |
N4 |
C13 |
N5 |
0.2 |
359.9 |
C15 |
N4 |
C13 |
H21 |
180.2 |
179.7 |
C15 |
C14 |
N5 |
C17 |
180.9 |
180.0 |
N4 |
C13 |
N5 |
C14 |
360.0 |
0.0 |
C14 |
N5 |
C13 |
H21 |
180.0 |
180.3 |
C10 |
C11 |
O3 |
H17 |
123.1 |
122.7 |
O3 |
C11 |
C12 |
H19 |
107.2 |
122.6 |
C11 |
C12 |
O4 |
H19 |
123.0 |
122.6 |
O4 |
C12 |
C9 |
H15 |
349.5 |
336.1 |
C9 |
C12 |
O4 |
H19 |
237.9 |
237.4 |
C15 |
N4 |
C10 |
C13 |
181.5 |
180.4 |
C10 |
N4 |
C13 |
N5 |
181.4 |
180.3 |
C10 |
N4 |
C13 |
H21 |
1.4 |
0.0 |
O3 |
C11 |
C10 |
H17 |
236.0 |
237.3 |
C11 |
C10 |
N4 |
C13 |
312.1 |
265.0 |
C10 |
C11 |
C12 |
H19 |
225.2 |
241.3 |
O2 |
C10 |
N4 |
C13 |
69.5 |
20.3 |
C10 |
O2 |
C9 |
H15 |
276.0 |
281.7 |
C14 |
N5 |
C13 |
N4 |
360.0 |
0.0 |
N5 |
C13 |
N4 |
H21 |
180.0 |
180.2 |
O4 |
C12 |
C11 |
H19 |
236.0 |
237.4 |
C11 |
C12 |
C9 |
H15 |
108.7 |
94.9 |
C9 |
C12 |
C11 |
H19 |
117.6 |
118.6 |
C12 |
C9 |
O2 |
H15 |
114.4 |
118.8 |
O2 |
C9 |
C12 |
H19 |
111.1 |
94.7 |
O2 |
C9 |
C8 |
H13 |
14.5 |
306.5 |
O2 |
C9 |
C8 |
H14 |
133.8 |
186.5 |
O4 |
C12 |
C9 |
H19 |
123.2 |
122.6 |
C11 |
C12 |
C9 |
H19 |
242.3 |
241.4 |
O2 |
C9 |
C12 |
C8 |
123.3 |
118.9 |
O2 |
C9 |
C12 |
H15 |
244.7 |
241.2 |
C12 |
C9 |
C8 |
H13 |
136.2 |
61.9 |
C12 |
C9 |
C8 |
H14 |
255.4 |
301.8 |
O2 |
C9 |
C8 |
C12 |
238.4 |
244.6 |
O2 |
C9 |
C8 |
H15 |
117.1 |
122.3 |
C9 |
C8 |
N3 |
H12 |
234.0 |
304.0 |
H13 |
C8 |
C9 |
H14 |
240.7 |
120.0 |
N4 |
C13 |
N5 |
H21 |
180.0 |
179.8 |
C7 |
N3 |
C8 |
H12 |
239.1 |
236.0 |
C8 |
N3 |
C7 |
H11 |
231.4 |
60.0 |
C8 |
N3 |
C7 |
H10 |
351.0 |
300.0 |
C8 |
N3 |
C7 |
H12 |
120.9 |
124.0 |
N3 |
C7 |
C6 |
H8 |
264.3 |
60.0 |
N3 |
C7 |
C6 |
H9 |
24.0 |
300.0 |
H11 |
C7 |
N3 |
H10 |
240.4 |
120.0 |
N2 |
C6 |
C7 |
H8 |
239.9 |
120.0 |
N2 |
C6 |
C7 |
H9 |
120.1 |
240.0 |
C7 |
C6 |
N2 |
H7 |
48.8 |
359.9 |
H8 |
C6 |
C7 |
H9 |
240.2 |
120.0 |
C7 |
C6 |
N2 |
H8 |
120.1 |
240.0 |
C7 |
C6 |
N2 |
H9 |
239.9 |
120.0 |
H8 |
C6 |
N2 |
H9 |
119.8 |
240.0 |
C4 |
N2 |
C6 |
H8 |
108.7 |
300.0 |
C4 |
N2 |
C6 |
H9 |
348.9 |
60.0 |
C6 |
N2 |
C4 |
H7 |
180.0 |
179.9 |
N2 |
C4 |
C3 |
H6 |
5.4 |
359.1 |
C6 |
N2 |
C4 |
N1 |
359.3 |
360.0 |
N1 |
C4 |
C3 |
C2 |
3.3 |
0.5 |
N1 |
C4 |
C3 |
H6 |
183.3 |
179.9 |
C5 |
N1 |
C4 |
C3 |
357.3 |
359.2 |
N1 |
C5 |
N |
C2 |
4.4 |
0.0 |
N1 |
C5 |
N |
C1 |
192.4 |
179.8 |
C6 |
N2 |
C4 |
C3 |
177.3 |
180.8 |
C4 |
C3 |
C2 |
H5 |
180.0 |
180.0 |
O1 |
C5 |
N |
C1 |
14.6 |
359.7 |
C2 |
N |
C5 |
C1 |
172.0 |
180.3 |
C5 |
N |
C2 |
H5 |
176.2 |
179.7 |
C5 |
N |
C1 |
O |
133.5 |
75.4 |
C5 |
N |
C1 |
H4 |
253.8 |
195.4 |
C5 |
N |
C1 |
H3 |
13.2 |
315.4 |
C4 |
C3 |
C2 |
H6 |
180.0 |
179.4 |
N |
C2 |
C3 |
H5 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
N |
360.0 |
360.0 |
C5 |
N |
C2 |
C1 |
187.5 |
179.7 |
C3 |
C2 |
N |
H5 |
180.0 |
180.0 |
C2 |
N |
C1 |
O |
321.3 |
255.1 |
C2 |
N |
C1 |
H4 |
81.6 |
15.1 |
C2 |
N |
C1 |
H3 |
201.0 |
135.1 |
C5 |
N |
C1 |
C2 |
172.3 |
180.3 |
C1 |
N |
C2 |
H5 |
348.7 |
360.0 |
H4 |
C1 |
N |
H3 |
240.6 |
240.0 |
N |
C1 |
O |
C |
300.8 |
77.9 |
H1 |
C |
O |
H |
240.0 |
240.0 |
H1 |
C |
O |
H2 |
120.0 |
120.0 |
H |
C |
O |
H2 |
240.0 |
240.0 |
N |
C1 |
O |
H4 |
120.3 |
120.0 |
N |
C1 |
O |
H3 |
239.7 |
240.1 |
C1 |
O |
C |
H1 |
180.0 |
175.9 |
C1 |
O |
C |
H |
300.0 |
295.9 |
C1 |
O |
C |
H2 |
60.0 |
55.9 |
C7 |
C6 |
H8 |
H9 |
119.7 |
240.0 |
H8 |
C6 |
N2 |
C4 |
108.7 |
300.0 |
N2 |
C6 |
H8 |
H9 |
240.3 |
120.0 |
H8 |
C6 |
N2 |
H7 |
288.7 |
120.0 |
C7 |
C6 |
H9 |
H8 |
240.3 |
120.0 |
H9 |
C6 |
N2 |
C4 |
348.9 |
60.0 |
N2 |
C6 |
H9 |
H8 |
119.7 |
240.0 |
H9 |
C6 |
N2 |
H7 |
168.9 |
239.9 |
H12 |
N3 |
C7 |
H11 |
110.5 |
296.0 |
H12 |
N3 |
C7 |
H10 |
230.1 |
176.0 |
H5 |
C2 |
N |
C1 |
348.7 |
360.0 |
O |
C |
H1 |
H |
120.0 |
120.0 |
O |
C |
H1 |
H2 |
240.0 |
240.0 |
H |
C |
H1 |
H2 |
120.0 |
120.0 |
O |
C |
H |
H1 |
240.0 |
240.0 |
O |
C |
H |
H2 |
120.0 |
120.0 |
H1 |
C |
H |
H2 |
240.0 |
240.0 |
O |
C |
H2 |
H1 |
120.0 |
120.0 |
O |
C |
H2 |
H |
240.0 |
239.9 |
H1 |
C |
H2 |
H |
120.0 |
120.0 |
N |
C1 |
H4 |
O |
238.1 |
240.0 |
N |
C1 |
H4 |
H3 |
119.1 |
120.0 |
N |
C1 |
H3 |
O |
121.9 |
120.0 |
N |
C1 |
H3 |
H4 |
240.9 |
240.0 |
C4 |
C3 |
H6 |
C2 |
180.0 |
180.6 |
H6 |
C3 |
C2 |
H5 |
360.0 |
0.6 |
C6 |
N2 |
H7 |
C4 |
180.0 |
180.1 |
H7 |
N2 |
C6 |
H8 |
288.7 |
120.0 |
H7 |
N2 |
C6 |
H9 |
168.9 |
239.9 |
H11 |
C7 |
N3 |
H12 |
110.5 |
296.0 |
N3 |
C7 |
H11 |
H10 |
119.4 |
240.0 |
H11 |
C7 |
C6 |
H8 |
144.0 |
180.0 |
H11 |
C7 |
C6 |
H9 |
263.8 |
60.0 |
H10 |
C7 |
N3 |
H12 |
230.1 |
176.0 |
N3 |
C7 |
H10 |
H11 |
240.6 |
120.0 |
H10 |
C7 |
C6 |
H8 |
24.5 |
300.0 |
H10 |
C7 |
C6 |
H9 |
144.2 |
180.0 |
C9 |
C8 |
H13 |
H14 |
118.9 |
240.0 |
H13 |
C8 |
N3 |
H12 |
113.7 |
64.0 |
C9 |
C8 |
H14 |
H13 |
241.1 |
120.0 |
H14 |
C8 |
N3 |
H12 |
354.4 |
184.0 |
O2 |
C9 |
H15 |
C12 |
113.7 |
115.4 |
O2 |
C9 |
H15 |
C8 |
242.2 |
237.6 |
H15 |
C9 |
C12 |
H19 |
226.4 |
213.5 |
H15 |
C9 |
C8 |
H13 |
257.4 |
184.2 |
H15 |
C9 |
C8 |
H14 |
16.7 |
64.1 |
H19 |
C12 |
C9 |
H15 |
226.4 |
213.5 |
H20 |
O4 |
C12 |
H19 |
57.0 |
302.6 |
H17 |
C11 |
C12 |
H19 |
342.2 |
360.0 |
H18 |
O3 |
C11 |
H17 |
56.9 |
61.1 |
H16 |
C10 |
N4 |
C13 |
189.6 |
142.7 |
H16 |
C10 |
C11 |
H17 |
161.9 |
146.4 |
H22 |
C16 |
N7 |
C17 |
180.1 |
180.0 |
H23 |
N8 |
C17 |
C14 |
179.5 |
179.9 |
C17 |
N8 |
H23 |
H24 |
120.0 |
180.0 |
H24 |
N8 |
C17 |
C14 |
299.5 |
360.0 |
C17 |
N8 |
H24 |
H23 |
240.0 |
180.0 |
N4 |
C13 |
H21 |
N5 |
180.0 |
180.3 |