PDB Chemical Component 78U
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 78U
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.249 |
1.208 |
| C |
OXT |
1.248 |
1.343 |
| C |
CA |
1.536 |
1.507 |
| CA |
CB |
1.553 |
1.529 |
| CA |
N |
1.485 |
1.469 |
| CB |
CAG |
1.526 |
1.530 |
| CB |
CG |
1.574 |
1.507 |
| CD1 |
CG |
1.330 |
1.342 |
| CD1 |
NE1 |
1.324 |
1.368 |
| CG |
CD2 |
1.351 |
1.464 |
| NE1 |
CE2 |
1.327 |
1.377 |
| CD2 |
CE2 |
1.352 |
1.406 |
| CD2 |
CE3 |
1.347 |
1.397 |
| CE2 |
CZ2 |
1.347 |
1.392 |
| CE3 |
CZ3 |
1.383 |
1.366 |
| CZ2 |
CH2 |
1.389 |
1.377 |
| CZ3 |
CH2 |
1.383 |
1.389 |
| OXT |
H1 |
0.950 |
0.967 |
| CA |
H2 |
1.100 |
1.090 |
| N |
H3 |
1.000 |
1.009 |
| N |
H4 |
1.000 |
1.009 |
| CB |
H6 |
1.100 |
1.090 |
| CAG |
H7 |
1.100 |
1.090 |
| CAG |
H8 |
1.100 |
1.090 |
| CAG |
H9 |
1.100 |
1.090 |
| CE3 |
H10 |
1.079 |
1.079 |
| CZ3 |
H11 |
1.080 |
1.080 |
| CH2 |
H12 |
1.080 |
1.081 |
| CZ2 |
H13 |
1.079 |
1.079 |
| NE1 |
H14 |
1.000 |
0.970 |
| CD1 |
H15 |
1.080 |
1.080 |
Bond Angles for 78U
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
116.7 |
120.0 |
| C |
OXT |
H1 |
109.5 |
117.0 |
| C |
CA |
CB |
110.6 |
109.5 |
| C |
CA |
N |
113.0 |
109.4 |
| C |
CA |
H2 |
107.1 |
109.5 |
| N |
CA |
CB |
111.2 |
109.5 |
| CA |
CB |
CAG |
106.9 |
109.5 |
| CA |
CB |
CG |
113.0 |
109.5 |
| CB |
CA |
H2 |
106.9 |
109.5 |
| CA |
CB |
H6 |
107.6 |
109.5 |
| N |
CA |
H2 |
107.7 |
109.5 |
| CA |
N |
H3 |
109.5 |
111.0 |
| CA |
N |
H4 |
109.5 |
111.0 |
| CAG |
CB |
CG |
113.8 |
109.5 |
| CAG |
CB |
H6 |
107.9 |
109.5 |
| CB |
CAG |
H7 |
109.5 |
109.5 |
| CB |
CAG |
H8 |
109.5 |
109.5 |
| CB |
CAG |
H9 |
109.5 |
109.5 |
| CB |
CG |
CD2 |
129.4 |
126.5 |
| CG |
CB |
H6 |
107.4 |
109.5 |
| CD1 |
NE1 |
H14 |
125.5 |
125.1 |
| CG |
CD2 |
CE2 |
106.3 |
106.1 |
| CG |
CD2 |
CE3 |
134.6 |
134.0 |
| CE3 |
CD2 |
CE2 |
119.1 |
119.9 |
| CD2 |
CE2 |
CZ2 |
122.1 |
119.4 |
| CD2 |
CE3 |
CZ3 |
121.1 |
119.8 |
| CD2 |
CE3 |
H10 |
119.5 |
120.1 |
| CE2 |
CZ2 |
H13 |
120.0 |
120.1 |
| CE3 |
CZ3 |
CH2 |
119.4 |
120.5 |
| CZ3 |
CE3 |
H10 |
119.5 |
120.1 |
| CE3 |
CZ3 |
H11 |
120.3 |
119.8 |
| CZ2 |
CH2 |
H12 |
120.8 |
119.6 |
| CH2 |
CZ3 |
H11 |
120.3 |
119.7 |
| CZ3 |
CH2 |
H12 |
120.8 |
119.6 |
| H3 |
N |
H4 |
109.4 |
111.0 |
| H7 |
CAG |
H8 |
109.4 |
109.4 |
| H7 |
CAG |
H9 |
109.4 |
109.5 |
| H8 |
CAG |
H9 |
109.5 |
109.5 |
Torsion Angles for 78U
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
H1 |
0.0 |
360.0 |
| O |
C |
CA |
CB |
274.9 |
100.0 |
| O |
C |
CA |
N |
149.5 |
340.0 |
| O |
C |
CA |
H2 |
31.0 |
220.1 |
| CA |
C |
OXT |
H1 |
176.9 |
180.0 |
| N |
CA |
C |
CB |
234.5 |
240.0 |
| C |
CA |
CB |
CAG |
154.6 |
60.0 |
| C |
CA |
CB |
CG |
280.5 |
180.0 |
| CB |
CA |
C |
H2 |
243.9 |
239.9 |
| C |
CA |
CB |
H6 |
38.9 |
300.0 |
| N |
CA |
C |
H2 |
118.4 |
119.9 |
| C |
CA |
N |
H3 |
180.0 |
60.0 |
| C |
CA |
N |
H4 |
300.0 |
184.0 |
| C |
CA |
CB |
N |
233.5 |
240.0 |
| C |
CA |
CB |
H2 |
116.2 |
120.0 |
| N |
CA |
CB |
H2 |
242.7 |
240.0 |
| CB |
CA |
N |
H3 |
54.9 |
300.0 |
| CB |
CA |
N |
H4 |
174.8 |
64.0 |
| CAG |
CB |
CA |
CG |
234.0 |
240.0 |
| CAG |
CB |
CA |
H6 |
115.7 |
120.0 |
| CA |
CB |
CAG |
H7 |
180.0 |
180.0 |
| CA |
CB |
CAG |
H8 |
300.0 |
300.0 |
| CA |
CB |
CAG |
H9 |
60.0 |
60.0 |
| CA |
CB |
CG |
CD2 |
246.2 |
120.0 |
| CG |
CB |
CA |
H6 |
241.6 |
240.0 |
| C |
CA |
N |
CB |
125.2 |
120.0 |
| C |
CA |
N |
H2 |
241.9 |
240.0 |
| N |
CA |
CB |
CAG |
281.1 |
180.0 |
| N |
CA |
CB |
CG |
47.0 |
300.0 |
| CB |
CA |
N |
H2 |
116.8 |
120.1 |
| N |
CA |
CB |
H6 |
165.4 |
60.0 |
| H3 |
N |
CA |
H4 |
240.0 |
236.0 |
| CA |
CB |
CAG |
CG |
125.5 |
120.0 |
| CAG |
CB |
CA |
H2 |
38.3 |
300.0 |
| CA |
CB |
CAG |
H6 |
244.6 |
240.0 |
| CAG |
CB |
CG |
CD2 |
8.3 |
240.0 |
| CG |
CB |
CAG |
H6 |
119.1 |
120.0 |
| H7 |
CAG |
CB |
H8 |
240.0 |
240.0 |
| H7 |
CAG |
CB |
H9 |
120.0 |
120.0 |
| H8 |
CAG |
CB |
H9 |
240.0 |
240.0 |
| CA |
CB |
CG |
CAG |
237.9 |
240.0 |
| CG |
CB |
CA |
H2 |
164.3 |
60.0 |
| CA |
CB |
CG |
H6 |
118.5 |
120.0 |
| CAG |
CB |
CG |
H6 |
240.6 |
240.0 |
| CG |
CB |
CAG |
H7 |
54.6 |
60.0 |
| CG |
CB |
CAG |
H8 |
174.5 |
180.0 |
| CG |
CB |
CAG |
H9 |
294.6 |
300.0 |
| CB |
CG |
CD2 |
CE2 |
180.5 |
180.0 |
| CB |
CG |
CD2 |
CE3 |
0.1 |
359.9 |
| CD1 |
CG |
CB |
H6 |
308.1 |
179.7 |
| CD2 |
CG |
CB |
H6 |
127.7 |
0.0 |
| CE3 |
CD2 |
CG |
CE2 |
179.6 |
179.9 |
| CG |
CD2 |
CE2 |
CZ2 |
179.8 |
179.9 |
| CG |
CD2 |
CE3 |
CZ3 |
180.4 |
180.0 |
| CG |
CD2 |
CE3 |
H10 |
0.4 |
0.1 |
| NE1 |
CE2 |
CZ2 |
H13 |
0.0 |
360.0 |
| CG |
CD2 |
CE2 |
CE3 |
179.7 |
179.9 |
| CE2 |
CD2 |
CE3 |
CZ3 |
360.0 |
359.9 |
| CE2 |
CD2 |
CE3 |
H10 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ2 |
H13 |
180.0 |
180.0 |
| CG |
CD2 |
CE3 |
CE2 |
180.4 |
180.1 |
| CE3 |
CD2 |
CE2 |
CZ2 |
0.2 |
0.0 |
| CD2 |
CE3 |
CZ3 |
CH2 |
359.6 |
0.1 |
| CZ3 |
CE3 |
CD2 |
H10 |
180.0 |
180.0 |
| CD2 |
CE3 |
CZ3 |
H11 |
179.7 |
180.0 |
| CE2 |
CZ2 |
CH2 |
H12 |
179.6 |
180.0 |
| CZ3 |
CE3 |
CD2 |
CE2 |
360.0 |
359.9 |
| CD2 |
CE3 |
CZ3 |
H10 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
H11 |
180.0 |
180.1 |
| CE3 |
CZ3 |
CH2 |
H12 |
180.6 |
180.0 |
| CD2 |
CE2 |
CZ2 |
CH2 |
0.0 |
0.0 |
| CZ2 |
CH2 |
CZ3 |
H11 |
180.5 |
180.1 |
| CZ3 |
CH2 |
CZ2 |
H12 |
180.0 |
180.0 |
| CH2 |
CZ3 |
CE3 |
H10 |
179.6 |
180.0 |
| CE3 |
CZ3 |
CH2 |
H11 |
180.0 |
179.9 |
| CZ2 |
CH2 |
CZ3 |
H12 |
180.0 |
180.0 |
| C |
CA |
H2 |
CB |
241.4 |
240.0 |
| C |
CA |
H2 |
N |
121.9 |
119.9 |
| N |
CA |
H2 |
CB |
119.6 |
120.0 |
| H2 |
CA |
CB |
CAG |
38.3 |
300.0 |
| H2 |
CA |
CB |
CG |
164.3 |
60.0 |
| H2 |
CA |
CB |
H6 |
282.7 |
180.0 |
| H2 |
CA |
N |
H3 |
298.1 |
180.0 |
| H2 |
CA |
N |
H4 |
58.0 |
303.9 |
| H3 |
N |
CA |
CB |
54.9 |
300.0 |
| H3 |
N |
CA |
H2 |
298.1 |
180.0 |
| CA |
N |
H3 |
H4 |
120.0 |
123.9 |
| H4 |
N |
CA |
CB |
174.8 |
64.0 |
| H4 |
N |
CA |
H2 |
58.0 |
303.9 |
| CA |
N |
H4 |
H3 |
240.0 |
236.0 |
| CA |
CB |
H6 |
CAG |
115.0 |
120.0 |
| CA |
CB |
H6 |
CG |
238.1 |
240.0 |
| H6 |
CB |
CA |
H2 |
282.7 |
180.0 |
| CAG |
CB |
H6 |
CG |
123.1 |
120.0 |
| H6 |
CB |
CAG |
H7 |
295.4 |
300.0 |
| H6 |
CB |
CAG |
H8 |
55.4 |
60.0 |
| H6 |
CB |
CAG |
H9 |
175.4 |
180.0 |
| H6 |
CB |
CG |
CD2 |
127.7 |
0.0 |
| H7 |
CAG |
CB |
CG |
54.6 |
60.0 |
| H7 |
CAG |
CB |
H6 |
295.4 |
300.0 |
| CB |
CAG |
H7 |
H8 |
120.0 |
120.0 |
| CB |
CAG |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
CAG |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
CAG |
CB |
CG |
174.5 |
180.0 |
| H8 |
CAG |
CB |
H6 |
55.4 |
60.0 |
| CB |
CAG |
H8 |
H7 |
240.0 |
240.0 |
| CB |
CAG |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
CAG |
H8 |
H9 |
240.0 |
240.0 |
| H9 |
CAG |
CB |
CG |
294.6 |
300.0 |
| H9 |
CAG |
CB |
H6 |
175.4 |
180.0 |
| CB |
CAG |
H9 |
H7 |
120.0 |
120.0 |
| CB |
CAG |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
CAG |
H9 |
H8 |
120.0 |
120.0 |
| H10 |
CE3 |
CD2 |
CE2 |
180.0 |
180.0 |
| CD2 |
CE3 |
H10 |
CZ3 |
180.0 |
180.0 |
| H10 |
CE3 |
CZ3 |
CH2 |
179.6 |
180.0 |
| H10 |
CE3 |
CZ3 |
H11 |
359.7 |
359.9 |
| CE3 |
CZ3 |
H11 |
CH2 |
180.0 |
180.1 |
| H11 |
CZ3 |
CE3 |
H10 |
359.7 |
359.9 |
| H11 |
CZ3 |
CH2 |
H12 |
0.5 |
0.0 |
| H12 |
CH2 |
CZ3 |
H11 |
0.5 |
0.0 |
| H13 |
CZ2 |
CH2 |
H12 |
359.6 |
0.0 |
| H15 |
CD1 |
NE1 |
H14 |
0.0 |
0.1 |