Atom Nomenclature for 78J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 78J

Atom Name (V3) Atom Name (V2)
C01 C01
C05 C05
C06 C06
C08 C08
C09 C09
C11 C11
N13 N13
C14 C14
N15 N15
C17 C17
C19 C19
C22 C22
N25 N25
C27 C27
C30 C30
O32 O32
C33 C33
C36 C36
C38 C38
C41 C41
C44 C44
C47 C47
C50 C50
C53 C53
N54 N54
C56 C56
O57 O57
H011 H011
H012 H012
H013 H013
H06 H06
H09 H09
H11 H11
H15 H15
H17 H17
H191 H191
H192 H192
H30 H30
H221 H221
H222 H222
H25 H25
H271 H271
H272 H272
H331 H331
H332 H332
H36 H36
H381 H381
H382 H382
H501 H501
H502 H502
H411 H411
H412 H412
H441 H441
H442 H442
H471 H471
H472 H472
H54 H54