PDB Chemical Component 787
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 787
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.404 |
1.382 |
| C1 |
C6 |
1.409 |
1.382 |
| C1 |
H1 |
1.103 |
1.080 |
| C2 |
C3 |
1.419 |
1.382 |
| C2 |
H2 |
1.104 |
1.080 |
| C3 |
C4 |
1.454 |
1.382 |
| C3 |
H3 |
1.104 |
1.080 |
| C4 |
C5 |
1.423 |
1.383 |
| C4 |
C7 |
1.398 |
1.507 |
| C5 |
C6 |
1.440 |
1.382 |
| C5 |
H5 |
1.102 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
| C7 |
P8 |
1.770 |
1.823 |
| C7 |
P9 |
1.870 |
1.823 |
| C7 |
H7 |
1.115 |
1.090 |
| P8 |
O14 |
1.661 |
1.610 |
| P8 |
O15 |
1.491 |
1.479 |
| P8 |
O16 |
1.427 |
1.610 |
| P9 |
O11 |
1.515 |
1.610 |
| P9 |
O12 |
1.473 |
1.610 |
| P9 |
O13 |
1.448 |
1.480 |
| O11 |
H11 |
0.950 |
0.967 |
| O12 |
H12 |
0.950 |
0.967 |
| O14 |
H14 |
0.950 |
0.967 |
| O16 |
H16 |
0.950 |
0.968 |
Bond Angles for 787
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
121.8 |
120.0 |
| C2 |
C1 |
H1 |
118.9 |
120.0 |
| C1 |
C2 |
C3 |
122.0 |
120.0 |
| C1 |
C2 |
H2 |
118.5 |
120.0 |
| C6 |
C1 |
H1 |
119.3 |
120.0 |
| C1 |
C6 |
C5 |
118.6 |
120.0 |
| C1 |
C6 |
H6 |
119.7 |
120.0 |
| C3 |
C2 |
H2 |
119.6 |
120.0 |
| C2 |
C3 |
C4 |
116.0 |
120.0 |
| C2 |
C3 |
H3 |
120.9 |
120.0 |
| C4 |
C3 |
H3 |
123.1 |
120.0 |
| C3 |
C4 |
C5 |
122.0 |
120.0 |
| C3 |
C4 |
C7 |
117.0 |
120.0 |
| C5 |
C4 |
C7 |
120.9 |
120.0 |
| C4 |
C5 |
C6 |
118.9 |
120.0 |
| C4 |
C5 |
H5 |
120.0 |
120.0 |
| C4 |
C7 |
P8 |
116.3 |
109.5 |
| C4 |
C7 |
P9 |
116.5 |
109.5 |
| C4 |
C7 |
H7 |
99.6 |
109.5 |
| C6 |
C5 |
H5 |
121.2 |
120.0 |
| C5 |
C6 |
H6 |
121.8 |
119.9 |
| P8 |
C7 |
P9 |
112.7 |
109.5 |
| P8 |
C7 |
H7 |
104.8 |
109.5 |
| C7 |
P8 |
O14 |
103.6 |
109.5 |
| C7 |
P8 |
O15 |
108.2 |
109.5 |
| C7 |
P8 |
O16 |
115.0 |
109.5 |
| P9 |
C7 |
H7 |
104.5 |
109.4 |
| C7 |
P9 |
O11 |
107.5 |
109.5 |
| C7 |
P9 |
O12 |
109.1 |
109.5 |
| C7 |
P9 |
O13 |
107.6 |
109.4 |
| O14 |
P8 |
O15 |
109.1 |
109.5 |
| O14 |
P8 |
O16 |
107.9 |
109.4 |
| P8 |
O14 |
H14 |
103.5 |
106.8 |
| O15 |
P8 |
O16 |
112.6 |
109.5 |
| P8 |
O16 |
H16 |
115.0 |
106.7 |
| O11 |
P9 |
O12 |
105.8 |
109.5 |
| O11 |
P9 |
O13 |
114.8 |
109.5 |
| P9 |
O11 |
H11 |
107.5 |
106.8 |
| O12 |
P9 |
O13 |
111.8 |
109.5 |
| P9 |
O12 |
H12 |
109.1 |
106.8 |
Torsion Angles for 787
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.1 |
| C2 |
C1 |
C6 |
C5 |
358.4 |
359.8 |
| C2 |
C1 |
C6 |
H6 |
178.4 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
356.0 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
176.0 |
180.0 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.9 |
| C6 |
C1 |
C2 |
C3 |
0.2 |
0.0 |
| C6 |
C1 |
C2 |
H2 |
180.2 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
7.0 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
187.1 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.8 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.1 |
| H1 |
C1 |
C2 |
C3 |
180.2 |
179.9 |
| H1 |
C1 |
C2 |
H2 |
0.2 |
359.9 |
| H1 |
C1 |
C6 |
C5 |
178.4 |
179.9 |
| H1 |
C1 |
C6 |
H6 |
358.4 |
0.1 |
| C3 |
C2 |
C1 |
C6 |
0.2 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
180.2 |
179.9 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
9.6 |
0.3 |
| C2 |
C3 |
C4 |
C7 |
186.0 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
180.2 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.2 |
359.9 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
176.0 |
179.9 |
| H2 |
C2 |
C3 |
H3 |
356.0 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
176.0 |
179.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
| C5 |
C4 |
C3 |
C7 |
183.6 |
180.4 |
| C3 |
C4 |
C5 |
C6 |
348.7 |
359.4 |
| C3 |
C4 |
C5 |
H5 |
168.7 |
179.9 |
| C3 |
C4 |
C7 |
P8 |
61.4 |
240.0 |
| C3 |
C4 |
C7 |
P9 |
284.8 |
120.0 |
| C3 |
C4 |
C7 |
H7 |
173.3 |
0.0 |
| H3 |
C3 |
C2 |
H2 |
356.0 |
360.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
| H3 |
C3 |
C4 |
C5 |
189.6 |
180.3 |
| H3 |
C3 |
C4 |
C7 |
6.0 |
359.9 |
| C1 |
C6 |
C5 |
C4 |
7.0 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
189.6 |
180.3 |
| C3 |
C4 |
C5 |
C7 |
176.3 |
179.6 |
| C5 |
C4 |
C7 |
P8 |
237.9 |
59.7 |
| C5 |
C4 |
C7 |
P9 |
101.2 |
299.7 |
| C5 |
C4 |
C7 |
H7 |
349.7 |
179.7 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.5 |
| C4 |
C5 |
C6 |
H6 |
187.0 |
180.3 |
| C7 |
C4 |
C3 |
H3 |
6.0 |
359.9 |
| C3 |
C4 |
C7 |
C5 |
183.6 |
180.4 |
| C7 |
C4 |
C5 |
C6 |
172.4 |
179.8 |
| C7 |
C4 |
C5 |
H5 |
352.4 |
0.3 |
| P8 |
C7 |
C4 |
P9 |
136.6 |
120.0 |
| P8 |
C7 |
C4 |
H7 |
248.2 |
240.0 |
| C4 |
C7 |
P8 |
O14 |
162.1 |
180.0 |
| C4 |
C7 |
P8 |
O15 |
46.4 |
300.0 |
| C4 |
C7 |
P8 |
O16 |
279.5 |
60.1 |
| P9 |
C7 |
C4 |
H7 |
111.5 |
120.0 |
| C4 |
C7 |
P9 |
O11 |
165.4 |
180.0 |
| C4 |
C7 |
P9 |
O12 |
51.1 |
300.0 |
| C4 |
C7 |
P9 |
O13 |
289.6 |
60.0 |
| C5 |
C6 |
C1 |
H1 |
178.4 |
179.9 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
| C6 |
C5 |
C4 |
C7 |
172.4 |
179.8 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.5 |
| H5 |
C5 |
C4 |
C7 |
352.4 |
0.3 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.5 |
| H5 |
C5 |
C6 |
H6 |
7.1 |
359.8 |
| H6 |
C6 |
C1 |
H1 |
358.4 |
0.1 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
| H6 |
C6 |
C5 |
H5 |
7.1 |
359.8 |
| C4 |
C7 |
P8 |
P9 |
221.8 |
240.0 |
| C4 |
C7 |
P8 |
H7 |
108.8 |
120.0 |
| P9 |
C7 |
P8 |
H7 |
247.0 |
240.1 |
| P8 |
C7 |
P9 |
O11 |
27.3 |
60.0 |
| P8 |
C7 |
P9 |
O12 |
273.0 |
180.0 |
| P8 |
C7 |
P9 |
O13 |
151.5 |
300.0 |
| O14 |
P8 |
C7 |
O15 |
115.7 |
240.0 |
| O14 |
P8 |
C7 |
O16 |
242.6 |
120.0 |
| C7 |
P8 |
O14 |
H14 |
180.0 |
60.0 |
| O15 |
P8 |
C7 |
O16 |
126.8 |
239.9 |
| C7 |
P8 |
O16 |
H16 |
180.0 |
299.9 |
| C4 |
C7 |
P9 |
P8 |
138.1 |
120.0 |
| C4 |
C7 |
P9 |
H7 |
251.3 |
240.0 |
| P8 |
C7 |
P9 |
H7 |
113.2 |
120.0 |
| P9 |
C7 |
P8 |
O14 |
300.3 |
300.0 |
| P9 |
C7 |
P8 |
O15 |
184.6 |
60.0 |
| P9 |
C7 |
P8 |
O16 |
57.7 |
180.1 |
| O11 |
P9 |
C7 |
O12 |
114.3 |
240.0 |
| O11 |
P9 |
C7 |
O13 |
235.8 |
120.0 |
| C7 |
P9 |
O11 |
H11 |
180.0 |
180.0 |
| O12 |
P9 |
C7 |
O13 |
121.5 |
240.0 |
| C7 |
P9 |
O12 |
H12 |
180.0 |
299.9 |
| C4 |
C7 |
H7 |
P8 |
239.4 |
240.0 |
| C4 |
C7 |
H7 |
P9 |
120.7 |
120.0 |
| P8 |
C7 |
H7 |
P9 |
241.3 |
240.0 |
| H7 |
C7 |
P8 |
O14 |
53.3 |
60.0 |
| H7 |
C7 |
P8 |
O15 |
297.6 |
179.9 |
| H7 |
C7 |
P8 |
O16 |
170.8 |
300.0 |
| H7 |
C7 |
P9 |
O11 |
274.1 |
300.0 |
| H7 |
C7 |
P9 |
O12 |
159.8 |
60.1 |
| H7 |
C7 |
P9 |
O13 |
38.3 |
180.0 |
| O14 |
P8 |
C7 |
P9 |
300.3 |
300.0 |
| O14 |
P8 |
C7 |
H7 |
53.3 |
60.0 |
| C7 |
P8 |
O14 |
O15 |
244.9 |
120.0 |
| C7 |
P8 |
O14 |
O16 |
122.3 |
240.0 |
| O15 |
P8 |
O14 |
O16 |
237.4 |
120.0 |
| O14 |
P8 |
O16 |
H16 |
294.9 |
180.0 |
| O15 |
P8 |
C7 |
P9 |
184.6 |
60.0 |
| O15 |
P8 |
C7 |
H7 |
297.6 |
179.9 |
| C7 |
P8 |
O15 |
O14 |
112.0 |
240.0 |
| C7 |
P8 |
O15 |
O16 |
231.8 |
120.0 |
| O14 |
P8 |
O15 |
O16 |
119.8 |
240.0 |
| O15 |
P8 |
O14 |
H14 |
295.1 |
300.0 |
| O15 |
P8 |
O16 |
H16 |
55.4 |
60.0 |
| O16 |
P8 |
C7 |
P9 |
57.7 |
180.1 |
| O16 |
P8 |
C7 |
H7 |
170.8 |
300.0 |
| C7 |
P8 |
O16 |
O14 |
245.1 |
120.0 |
| C7 |
P8 |
O16 |
O15 |
124.6 |
240.0 |
| O14 |
P8 |
O16 |
O15 |
239.5 |
120.0 |
| O16 |
P8 |
O14 |
H14 |
57.7 |
180.0 |
| O11 |
P9 |
C7 |
H7 |
274.1 |
300.0 |
| C7 |
P9 |
O11 |
O12 |
243.5 |
120.0 |
| C7 |
P9 |
O11 |
O13 |
119.7 |
240.0 |
| O12 |
P9 |
O11 |
O13 |
236.2 |
120.0 |
| O11 |
P9 |
O12 |
H12 |
64.6 |
60.0 |
| O12 |
P9 |
C7 |
H7 |
159.8 |
60.1 |
| C7 |
P9 |
O12 |
O11 |
115.4 |
240.0 |
| C7 |
P9 |
O12 |
O13 |
241.1 |
120.0 |
| O11 |
P9 |
O12 |
O13 |
125.6 |
240.0 |
| O12 |
P9 |
O11 |
H11 |
296.5 |
60.0 |
| O13 |
P9 |
C7 |
H7 |
38.3 |
180.0 |
| C7 |
P9 |
O13 |
O11 |
240.3 |
120.0 |
| C7 |
P9 |
O13 |
O12 |
119.8 |
240.0 |
| O11 |
P9 |
O13 |
O12 |
239.5 |
120.0 |
| O13 |
P9 |
O11 |
H11 |
60.3 |
300.0 |
| O13 |
P9 |
O12 |
H12 |
298.9 |
180.0 |
| H11 |
O11 |
P9 |
O12 |
296.5 |
60.0 |
| H11 |
O11 |
P9 |
O13 |
60.3 |
300.0 |
| H12 |
O12 |
P9 |
O13 |
298.9 |
180.0 |
| H14 |
O14 |
P8 |
O15 |
295.1 |
300.0 |
| H14 |
O14 |
P8 |
O16 |
57.7 |
180.0 |