PDB Chemical Component 780
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 780
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.424 |
1.400 |
C1 |
C6 |
1.424 |
1.391 |
C1 |
C7 |
1.426 |
1.477 |
C2 |
C3 |
1.402 |
1.365 |
C2 |
HC2 |
1.073 |
1.080 |
C3 |
C4 |
1.360 |
1.391 |
C3 |
HC3 |
1.076 |
1.080 |
C4 |
C5 |
1.334 |
1.408 |
C4 |
N3 |
1.292 |
1.379 |
C5 |
C6 |
1.399 |
1.395 |
C5 |
N4 |
1.325 |
1.357 |
C6 |
HC6 |
1.081 |
1.080 |
C7 |
N1 |
1.320 |
1.333 |
C7 |
N2 |
1.310 |
1.332 |
N1 |
HH11 |
1.011 |
0.970 |
N1 |
HH12 |
0.994 |
0.971 |
N2 |
HH21 |
1.010 |
0.970 |
N2 |
HH22 |
0.995 |
0.970 |
N3 |
C8 |
1.291 |
1.369 |
N3 |
HN3 |
0.990 |
0.970 |
N4 |
C8 |
1.324 |
1.311 |
C8 |
C1' |
1.420 |
1.478 |
C1' |
C2' |
1.396 |
1.397 |
C1' |
C6' |
1.431 |
1.398 |
C2' |
C3' |
1.385 |
1.380 |
C2' |
HC2' |
1.081 |
1.080 |
C3' |
C4' |
1.373 |
1.382 |
C3' |
HC3' |
1.080 |
1.080 |
C4' |
C5' |
1.391 |
1.393 |
C4' |
HC4' |
1.081 |
1.080 |
C5' |
C6' |
1.424 |
1.397 |
C5' |
C1B |
1.410 |
1.484 |
C6' |
O6' |
1.387 |
1.357 |
C1B |
C2B |
1.407 |
1.394 |
C1B |
C6B |
1.402 |
1.393 |
C2B |
C3B |
1.401 |
1.380 |
C2B |
H2B |
1.080 |
1.080 |
C3B |
C4B |
1.388 |
1.383 |
C3B |
H3B |
1.079 |
1.079 |
C4B |
C5B |
1.389 |
1.384 |
C4B |
H4B |
1.080 |
1.080 |
C5B |
C6B |
1.391 |
1.381 |
C5B |
H5B |
1.081 |
1.080 |
C6B |
H6B |
1.082 |
1.080 |
Bond Angles for 780
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
116.4 |
120.2 |
C2 |
C1 |
C7 |
120.9 |
119.9 |
C1 |
C2 |
C3 |
123.4 |
120.5 |
C1 |
C2 |
HC2 |
119.9 |
119.7 |
C6 |
C1 |
C7 |
122.7 |
119.9 |
C1 |
C6 |
C5 |
118.0 |
119.6 |
C1 |
C6 |
HC6 |
121.2 |
120.2 |
C1 |
C7 |
N1 |
121.4 |
120.0 |
C1 |
C7 |
N2 |
118.2 |
120.0 |
C3 |
C2 |
HC2 |
116.7 |
119.8 |
C2 |
C3 |
C4 |
116.6 |
120.1 |
C2 |
C3 |
HC3 |
122.4 |
119.9 |
C4 |
C3 |
HC3 |
121.0 |
119.9 |
C3 |
C4 |
C5 |
122.9 |
120.1 |
C3 |
C4 |
N3 |
130.0 |
133.7 |
C5 |
C4 |
N3 |
107.2 |
106.2 |
C4 |
C5 |
C6 |
122.8 |
119.5 |
C4 |
C5 |
N4 |
112.2 |
107.2 |
C4 |
N3 |
C8 |
105.1 |
107.3 |
C4 |
N3 |
HN3 |
131.6 |
126.3 |
C6 |
C5 |
N4 |
125.0 |
133.3 |
C5 |
C6 |
HC6 |
120.8 |
120.2 |
C5 |
N4 |
C8 |
99.6 |
109.5 |
N1 |
C7 |
N2 |
120.4 |
120.0 |
C7 |
N1 |
HH11 |
117.6 |
120.0 |
C7 |
N1 |
HH12 |
126.5 |
120.0 |
C7 |
N2 |
HH21 |
119.7 |
120.0 |
C7 |
N2 |
HH22 |
123.2 |
120.0 |
HH11 |
N1 |
HH12 |
115.9 |
120.1 |
HH21 |
N2 |
HH22 |
117.1 |
120.0 |
C8 |
N3 |
HN3 |
123.2 |
126.4 |
N3 |
C8 |
N4 |
115.9 |
109.9 |
N3 |
C8 |
C1' |
121.6 |
125.1 |
N4 |
C8 |
C1' |
122.3 |
125.0 |
C8 |
C1' |
C2' |
120.4 |
120.1 |
C8 |
C1' |
C6' |
122.8 |
120.1 |
C2' |
C1' |
C6' |
116.8 |
119.8 |
C1' |
C2' |
C3' |
121.4 |
120.1 |
C1' |
C2' |
HC2' |
119.9 |
119.9 |
C1' |
C6' |
C5' |
122.0 |
119.6 |
C1' |
C6' |
O6' |
118.9 |
120.2 |
C3' |
C2' |
HC2' |
118.8 |
120.0 |
C2' |
C3' |
C4' |
120.9 |
120.4 |
C2' |
C3' |
HC3' |
119.7 |
119.8 |
C4' |
C3' |
HC3' |
119.4 |
119.8 |
C3' |
C4' |
C5' |
121.6 |
120.2 |
C3' |
C4' |
HC4' |
118.6 |
119.9 |
C5' |
C4' |
HC4' |
119.8 |
119.9 |
C4' |
C5' |
C6' |
117.2 |
119.9 |
C4' |
C5' |
C1B |
118.9 |
120.1 |
C6' |
C5' |
C1B |
123.9 |
120.1 |
C5' |
C6' |
O6' |
119.1 |
120.2 |
C5' |
C1B |
C2B |
122.9 |
120.1 |
C5' |
C1B |
C6B |
120.8 |
120.1 |
C2B |
C1B |
C6B |
116.3 |
119.8 |
C1B |
C2B |
C3B |
122.0 |
119.8 |
C1B |
C2B |
H2B |
119.0 |
120.0 |
C1B |
C6B |
C5B |
122.1 |
119.8 |
C1B |
C6B |
H6B |
119.3 |
120.1 |
C3B |
C2B |
H2B |
119.0 |
120.1 |
C2B |
C3B |
C4B |
120.0 |
120.2 |
C2B |
C3B |
H3B |
120.4 |
119.9 |
C4B |
C3B |
H3B |
119.6 |
119.9 |
C3B |
C4B |
C5B |
119.2 |
120.2 |
C3B |
C4B |
H4B |
120.5 |
119.9 |
C5B |
C4B |
H4B |
120.3 |
119.9 |
C4B |
C5B |
C6B |
120.5 |
120.1 |
C4B |
C5B |
H5B |
120.1 |
119.9 |
C6B |
C5B |
H5B |
119.4 |
120.0 |
C5B |
C6B |
H6B |
118.6 |
120.0 |
Torsion Angles for 780
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C7 |
180.1 |
180.3 |
C2 |
C1 |
C6 |
C5 |
359.8 |
359.4 |
C2 |
C1 |
C6 |
HC6 |
179.9 |
179.6 |
C2 |
C1 |
C7 |
N1 |
175.6 |
180.0 |
C2 |
C1 |
C7 |
N2 |
355.4 |
0.0 |
C3 |
C2 |
C1 |
HC2 |
180.5 |
180.1 |
C1 |
C2 |
C3 |
C4 |
0.1 |
360.0 |
C1 |
C2 |
C3 |
HC3 |
180.1 |
180.0 |
C2 |
C1 |
C6 |
C7 |
179.9 |
179.7 |
C6 |
C1 |
C2 |
C3 |
0.1 |
0.3 |
C6 |
C1 |
C2 |
HC2 |
179.6 |
180.3 |
C6 |
C1 |
C7 |
N1 |
355.4 |
359.8 |
C6 |
C1 |
C7 |
N2 |
175.3 |
179.7 |
C4 |
C5 |
C6 |
C1 |
0.0 |
0.5 |
C1 |
C6 |
C5 |
N4 |
179.4 |
180.2 |
C5 |
C6 |
C1 |
HC6 |
180.0 |
179.8 |
C2 |
C1 |
C7 |
C6 |
180.1 |
180.3 |
C7 |
C1 |
C2 |
C3 |
180.0 |
180.0 |
C7 |
C1 |
C2 |
HC2 |
359.5 |
360.0 |
C7 |
C1 |
C6 |
C5 |
180.0 |
179.7 |
C7 |
C1 |
C6 |
HC6 |
0.0 |
359.9 |
N1 |
C7 |
C1 |
N2 |
180.1 |
180.0 |
C1 |
C7 |
N1 |
HH11 |
357.8 |
359.9 |
C1 |
C7 |
N1 |
HH12 |
179.4 |
180.0 |
C1 |
C7 |
N2 |
HH21 |
359.1 |
180.0 |
C1 |
C7 |
N2 |
HH22 |
178.0 |
359.7 |
C3 |
C2 |
C1 |
C6 |
0.1 |
0.3 |
C3 |
C2 |
C1 |
C7 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
HC2 |
179.5 |
179.9 |
C4 |
C3 |
C2 |
HC3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
359.8 |
360.0 |
C2 |
C3 |
C4 |
N3 |
180.6 |
180.0 |
HC2 |
C2 |
C1 |
C6 |
179.6 |
180.3 |
HC2 |
C2 |
C1 |
C7 |
359.5 |
360.0 |
C1 |
C2 |
HC2 |
C3 |
180.5 |
180.1 |
HC2 |
C2 |
C3 |
C4 |
180.6 |
180.0 |
HC2 |
C2 |
C3 |
HC3 |
0.6 |
0.1 |
C4 |
C3 |
C2 |
HC2 |
180.6 |
180.0 |
C2 |
C3 |
C4 |
HC3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
N3 |
179.2 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.2 |
359.8 |
C3 |
C4 |
C5 |
N4 |
180.7 |
180.0 |
C3 |
C4 |
N3 |
C8 |
179.2 |
180.0 |
C3 |
C4 |
N3 |
HN3 |
360.0 |
0.1 |
HC3 |
C3 |
C2 |
HC2 |
0.6 |
0.1 |
C2 |
C3 |
HC3 |
C4 |
180.0 |
180.0 |
HC3 |
C3 |
C4 |
C5 |
179.8 |
179.9 |
HC3 |
C3 |
C4 |
N3 |
0.6 |
360.0 |
C1 |
C6 |
C5 |
C4 |
0.0 |
0.5 |
C5 |
C4 |
C3 |
HC3 |
179.8 |
179.9 |
C3 |
C4 |
C5 |
N3 |
180.7 |
180.0 |
C5 |
C4 |
N3 |
C8 |
360.0 |
0.0 |
C5 |
C4 |
N3 |
HN3 |
180.7 |
180.1 |
C6 |
C5 |
C4 |
N4 |
179.5 |
179.8 |
C4 |
C5 |
C6 |
HC6 |
180.0 |
180.3 |
C4 |
C5 |
N4 |
C8 |
360.0 |
0.0 |
N3 |
C4 |
C3 |
HC3 |
0.6 |
360.0 |
C3 |
C4 |
N3 |
C5 |
179.3 |
180.0 |
N3 |
C4 |
C5 |
C6 |
179.5 |
179.8 |
N3 |
C4 |
C5 |
N4 |
0.0 |
360.0 |
C8 |
N3 |
C4 |
HN3 |
179.3 |
179.9 |
C4 |
N3 |
C8 |
N4 |
0.0 |
360.0 |
C4 |
N3 |
C8 |
C1' |
175.2 |
180.0 |
C5 |
C6 |
C1 |
C7 |
180.0 |
179.7 |
C1 |
C6 |
C5 |
HC6 |
180.0 |
180.2 |
C6 |
C5 |
C4 |
N3 |
179.5 |
179.8 |
C4 |
C5 |
C6 |
N4 |
180.6 |
180.3 |
C6 |
C5 |
N4 |
C8 |
180.5 |
180.3 |
N4 |
C5 |
C4 |
N3 |
0.0 |
360.0 |
C4 |
C5 |
N4 |
C6 |
179.5 |
179.7 |
N4 |
C5 |
C6 |
HC6 |
359.4 |
0.0 |
N3 |
C8 |
N4 |
C5 |
0.0 |
0.0 |
C5 |
N4 |
C8 |
C1' |
184.9 |
180.0 |
HC6 |
C6 |
C1 |
C7 |
0.0 |
359.9 |
C1 |
C6 |
HC6 |
C5 |
179.9 |
179.8 |
HC6 |
C6 |
C5 |
N4 |
359.4 |
0.0 |
C1 |
C7 |
N1 |
N2 |
179.9 |
180.0 |
N1 |
C7 |
N2 |
HH21 |
179.0 |
0.0 |
N1 |
C7 |
N2 |
HH22 |
357.8 |
179.7 |
HH11 |
N1 |
C7 |
HH12 |
178.4 |
179.9 |
C1 |
C7 |
N2 |
N1 |
180.1 |
180.0 |
N2 |
C7 |
N1 |
HH11 |
177.9 |
180.0 |
N2 |
C7 |
N1 |
HH12 |
359.5 |
0.0 |
HH21 |
N2 |
C7 |
HH22 |
181.2 |
180.4 |
HH11 |
N1 |
C7 |
N2 |
177.9 |
180.0 |
C7 |
N1 |
HH11 |
HH12 |
181.4 |
180.1 |
HH12 |
N1 |
C7 |
N2 |
359.5 |
0.0 |
C7 |
N1 |
HH12 |
HH11 |
178.4 |
179.9 |
C7 |
N2 |
HH21 |
HH22 |
178.9 |
179.6 |
C7 |
N2 |
HH22 |
HH21 |
181.1 |
180.4 |
C4 |
N3 |
C8 |
HN3 |
180.7 |
180.1 |
C5 |
N4 |
C8 |
N3 |
0.0 |
0.0 |
N4 |
C8 |
N3 |
C1' |
184.8 |
180.0 |
N3 |
C8 |
C1' |
C2' |
190.0 |
40.0 |
N3 |
C8 |
C1' |
C6' |
10.0 |
219.7 |
C4 |
N3 |
HN3 |
C8 |
179.1 |
179.9 |
HN3 |
N3 |
C8 |
N4 |
179.3 |
179.9 |
HN3 |
N3 |
C8 |
C1' |
354.5 |
359.9 |
N4 |
C8 |
N3 |
HN3 |
179.3 |
179.9 |
N3 |
C8 |
N4 |
C1' |
175.2 |
180.0 |
N4 |
C8 |
C1' |
C2' |
4.9 |
220.0 |
N4 |
C8 |
C1' |
C6' |
184.9 |
39.8 |
C1' |
C8 |
N3 |
HN3 |
354.5 |
359.9 |
N3 |
C8 |
C1' |
N4 |
185.1 |
180.0 |
C2' |
C1' |
C8 |
C6' |
180.0 |
180.2 |
C8 |
C1' |
C2' |
C3' |
179.9 |
180.1 |
C8 |
C1' |
C2' |
HC2' |
0.0 |
0.0 |
C8 |
C1' |
C6' |
C5' |
180.1 |
179.7 |
C8 |
C1' |
C6' |
O6' |
0.3 |
0.2 |
C8 |
C1' |
C2' |
C6' |
180.0 |
179.8 |
C2' |
C1' |
C6' |
C5' |
0.1 |
359.5 |
C2' |
C1' |
C6' |
O6' |
180.4 |
180.0 |
C3' |
C2' |
C1' |
HC2' |
179.9 |
180.1 |
C1' |
C2' |
C3' |
C4' |
0.1 |
360.0 |
C1' |
C2' |
C3' |
HC3' |
180.0 |
180.0 |
C8 |
C1' |
C6' |
C2' |
180.0 |
180.2 |
C6' |
C1' |
C2' |
C3' |
359.9 |
0.3 |
C6' |
C1' |
C2' |
HC2' |
180.0 |
180.2 |
C4' |
C5' |
C6' |
C1' |
359.8 |
0.4 |
C1' |
C6' |
C5' |
C1B |
179.6 |
180.3 |
C5' |
C6' |
C1' |
O6' |
179.8 |
179.6 |
C3' |
C2' |
C1' |
C6' |
359.9 |
0.3 |
C1' |
C2' |
C3' |
HC2' |
180.1 |
179.9 |
C4' |
C3' |
C2' |
HC3' |
180.1 |
179.9 |
C2' |
C3' |
C4' |
C5' |
359.9 |
360.0 |
C2' |
C3' |
C4' |
HC4' |
179.9 |
180.1 |
HC2' |
C2' |
C1' |
C6' |
180.0 |
180.2 |
C1' |
C2' |
HC2' |
C3' |
179.9 |
180.1 |
HC2' |
C2' |
C3' |
C4' |
180.0 |
180.0 |
HC2' |
C2' |
C3' |
HC3' |
359.9 |
0.1 |
C4' |
C3' |
C2' |
HC2' |
180.0 |
180.0 |
C2' |
C3' |
C4' |
HC3' |
179.9 |
180.1 |
C5' |
C4' |
C3' |
HC4' |
180.0 |
179.9 |
C3' |
C4' |
C5' |
C6' |
0.2 |
359.8 |
C3' |
C4' |
C5' |
C1B |
180.3 |
180.0 |
HC3' |
C3' |
C2' |
HC2' |
359.9 |
0.1 |
C2' |
C3' |
HC3' |
C4' |
180.1 |
179.9 |
HC3' |
C3' |
C4' |
C5' |
179.9 |
179.9 |
HC3' |
C3' |
C4' |
HC4' |
360.0 |
360.0 |
C1' |
C6' |
C5' |
C4' |
359.8 |
0.4 |
C5' |
C4' |
C3' |
HC3' |
179.9 |
179.9 |
C3' |
C4' |
C5' |
HC4' |
180.0 |
180.1 |
C6' |
C5' |
C4' |
C1B |
179.9 |
179.9 |
C4' |
C5' |
C6' |
O6' |
179.6 |
180.0 |
C4' |
C5' |
C1B |
C2B |
121.9 |
310.1 |
C4' |
C5' |
C1B |
C6B |
302.0 |
129.8 |
HC4' |
C4' |
C3' |
HC3' |
360.0 |
360.0 |
C3' |
C4' |
HC4' |
C5' |
180.0 |
179.9 |
HC4' |
C4' |
C5' |
C6' |
180.2 |
179.8 |
HC4' |
C4' |
C5' |
C1B |
0.3 |
359.9 |
C1' |
C6' |
C5' |
O6' |
180.2 |
180.4 |
C6' |
C5' |
C4' |
HC4' |
180.2 |
179.8 |
C4' |
C5' |
C6' |
C1B |
180.1 |
180.1 |
C6' |
C5' |
C1B |
C2B |
302.0 |
130.2 |
C6' |
C5' |
C1B |
C6B |
122.2 |
309.9 |
C1B |
C5' |
C4' |
HC4' |
0.3 |
359.9 |
C4' |
C5' |
C1B |
C6' |
179.9 |
179.9 |
C1B |
C5' |
C6' |
O6' |
359.4 |
359.8 |
C2B |
C1B |
C5' |
C6B |
179.9 |
180.3 |
C5' |
C1B |
C2B |
C3B |
180.0 |
180.0 |
C5' |
C1B |
C2B |
H2B |
0.0 |
360.0 |
C5' |
C1B |
C6B |
C5B |
179.9 |
179.7 |
C5' |
C1B |
C6B |
H6B |
0.1 |
0.3 |
C1' |
C6' |
O6' |
C5' |
179.8 |
179.6 |
O6' |
C6' |
C5' |
C1B |
359.4 |
359.8 |
C5' |
C1B |
C2B |
C6B |
180.1 |
179.7 |
C2B |
C1B |
C6B |
C5B |
0.1 |
359.4 |
C2B |
C1B |
C6B |
H6B |
180.2 |
180.0 |
C3B |
C2B |
C1B |
H2B |
180.0 |
180.0 |
C1B |
C2B |
C3B |
C4B |
0.1 |
0.0 |
C1B |
C2B |
C3B |
H3B |
179.9 |
180.0 |
C5' |
C1B |
C6B |
C2B |
179.9 |
180.3 |
C6B |
C1B |
C2B |
C3B |
359.9 |
0.3 |
C6B |
C1B |
C2B |
H2B |
179.9 |
180.2 |
C4B |
C5B |
C6B |
C1B |
360.0 |
0.7 |
C1B |
C6B |
C5B |
H5B |
179.9 |
180.3 |
C5B |
C6B |
C1B |
H6B |
179.8 |
179.4 |
C3B |
C2B |
C1B |
C6B |
359.9 |
0.3 |
C1B |
C2B |
C3B |
H2B |
180.0 |
180.0 |
C4B |
C3B |
C2B |
H3B |
180.2 |
180.0 |
C2B |
C3B |
C4B |
C5B |
360.0 |
0.0 |
C2B |
C3B |
C4B |
H4B |
180.0 |
180.0 |
H2B |
C2B |
C1B |
C6B |
179.9 |
180.2 |
C1B |
C2B |
H2B |
C3B |
180.0 |
180.0 |
H2B |
C2B |
C3B |
C4B |
180.1 |
180.0 |
H2B |
C2B |
C3B |
H3B |
359.9 |
0.1 |
C4B |
C3B |
C2B |
H2B |
180.1 |
180.0 |
C2B |
C3B |
C4B |
H3B |
179.8 |
180.0 |
C5B |
C4B |
C3B |
H4B |
180.0 |
180.1 |
C3B |
C4B |
C5B |
C6B |
360.0 |
359.6 |
C3B |
C4B |
C5B |
H5B |
180.0 |
179.9 |
H3B |
C3B |
C2B |
H2B |
359.9 |
0.1 |
C2B |
C3B |
H3B |
C4B |
180.2 |
180.0 |
H3B |
C3B |
C4B |
C5B |
180.2 |
180.0 |
H3B |
C3B |
C4B |
H4B |
0.2 |
360.0 |
C1B |
C6B |
C5B |
C4B |
360.0 |
0.7 |
C5B |
C4B |
C3B |
H3B |
180.2 |
180.0 |
C3B |
C4B |
C5B |
H4B |
180.0 |
179.9 |
C6B |
C5B |
C4B |
H5B |
180.0 |
179.7 |
C4B |
C5B |
C6B |
H6B |
179.8 |
180.0 |
H4B |
C4B |
C3B |
H3B |
0.2 |
360.0 |
C3B |
C4B |
H4B |
C5B |
180.0 |
180.1 |
H4B |
C4B |
C5B |
C6B |
180.0 |
179.7 |
H4B |
C4B |
C5B |
H5B |
0.0 |
0.0 |
C1B |
C6B |
C5B |
H6B |
180.2 |
180.6 |
C6B |
C5B |
C4B |
H4B |
180.0 |
179.7 |
C4B |
C5B |
C6B |
H5B |
180.0 |
180.3 |
H5B |
C5B |
C4B |
H4B |
0.0 |
0.0 |
C4B |
C5B |
H5B |
C6B |
180.0 |
179.7 |
H5B |
C5B |
C6B |
H6B |
359.8 |
359.7 |
C1B |
C6B |
H6B |
C5B |
179.8 |
179.4 |
H6B |
C6B |
C5B |
H5B |
359.8 |
359.7 |