Atom Nomenclature for 773

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 773

Atom Name (V3) Atom Name (V2)
O3 O3
C9 C9
C8 C8
O1 O1
C12 C12
C13 C13
C11 C11
C10 C10
N1 N1
C14 C14
C15 C15
O2 O2
C7 C7
C5 C5
C4 C4
O10 O10
C2 C2
C1 C1
O5 O5
O4 O4
C25 C25
C42 C42
C43 C43
C26 C26
O7 O7
C24 C24
O6 O6
N2 N2
C23 C23
C22 C22
C21 C21
O9 O9
C19 C19
C20 C20
C18 C18
C16 C16
O8 O8
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C38 C38
N3 N3
C40 C40
C37 C37
C36 C36
C35 C35
C34 C34
C17 C17
C41 C41
C27 C27
C3 C3
C6 C6
HO3 HO3
H9 H9
H8 H8
H12 H12
H131 1H13
H132 2H13
H133 3H13
H111 1H11
H112 2H11
H10 H10
H141 1H14
H142 2H14
H143 3H14
H151 1H15
H152 2H15
H153 3H15
H7 H7
H5 H5
H2 H2
H25 H25
H421 1H42
H422 2H42
H431 1H43
H432 2H43
H433 3H43
HN2 HN2
H23 H23
H22 H22
H19 H19
H201 1H20
H202 2H20
H203 3H20
H181 1H18
H182 2H18
H281 1H28
H282 2H28
H29 H29
H30 H30
H32 H32
H40 H40
H37 H37
H36 H36
H35 H35
H34 H34
H171 1H17
H172 2H17
H173 3H17
H411 1H41
H412 2H41
H413 3H41
H271 1H27
H272 2H27
H273 3H27
H31 1H3
H32A 2H3
H33 3H3
H61 1H6
H62 2H6
H63 3H6