Atom Nomenclature for 76A

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 76A

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
N15 N15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
N27 N27
O28 O28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
O35 O35
H35 H35
H32 H32
H331 1H33
H332 2H33
H341 1H34
H342 2H34
H29 H29
H301 1H30
H302 2H30
H311 1H31
H312 2H31
H27 H27
H23 H23
H22 H22
H25 H25
H211 1H21
H212 2H21
H16 H16
H13 H13
H12 H12
H10 H10
H9 H9
H7 H7
H6 H6
HO1 HO1
H4 H4
H3 H3