PDB Chemical Component 75B

Ideal Model

Chemical Description

Name 5-selenophen-2-yluridine 5'-(dihydrogen phosphate)
Formula C13 H15 N2 O9 P Se
Formal charge 0
Molecular weight 453.200 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HOP3
Bond count 43
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 5-selenophen-2-yluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)-5-selenophen-2-yl-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3[se]ccc3
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3[se]ccc3
Stereo SMILES (OpenEye) c1cc([se]c1)C2=CN(C(=O)NC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C13H15N2O9PSe/c16-9-7(5-23-25(20,21)22)24-12(10(9)17)15-4-6(8-2-1-3-26-8)11(18)14-13(15)19/h1-4,7,9-10,12,16-17H,5H2,(H,14,18,19)(H2,20,21,22)/t7-,9-,10-,12-/m1/s1
InChIKey descriptor XPHVOCQWRLMUPG-UGKPPGOTSA-N

Status Information

Last modified 2017-06-30
Created 2016-08-26
Release status REL
Model PDB code 5T3K
Processing site RCSB