PDB Chemical Component 75B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 75B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.502 |
1.610 |
| OP2 |
P |
1.511 |
1.480 |
| P |
O5' |
1.587 |
1.610 |
| C33 |
C22 |
1.429 |
1.338 |
| C33 |
C44 |
1.478 |
1.433 |
| C22 |
SE1 |
1.869 |
1.981 |
| C44 |
C55 |
1.428 |
1.354 |
| O5' |
C5' |
1.415 |
1.429 |
| C5' |
C4' |
1.509 |
1.530 |
| SE1 |
C55 |
1.871 |
1.982 |
| C55 |
C5 |
1.537 |
1.472 |
| C4' |
O4' |
1.454 |
1.437 |
| C4' |
C3' |
1.512 |
1.541 |
| O4' |
C1' |
1.410 |
1.444 |
| C5 |
C6 |
1.392 |
1.369 |
| C5 |
C4 |
1.396 |
1.472 |
| C6 |
N1 |
1.313 |
1.364 |
| C3' |
O3' |
1.414 |
1.429 |
| C3' |
C2' |
1.527 |
1.548 |
| N1 |
C1' |
1.487 |
1.465 |
| N1 |
C2 |
1.329 |
1.343 |
| C1' |
C2' |
1.537 |
1.549 |
| C4 |
O4 |
1.185 |
1.217 |
| C4 |
N3 |
1.314 |
1.350 |
| C2' |
O2' |
1.415 |
1.429 |
| C2 |
N3 |
1.311 |
1.343 |
| C2 |
O2 |
1.170 |
1.216 |
| C5' |
H1 |
1.100 |
1.090 |
| C5' |
H2 |
1.099 |
1.089 |
| C4' |
H3 |
1.100 |
1.091 |
| C3' |
H4 |
1.100 |
1.091 |
| O3' |
H5 |
0.950 |
0.967 |
| C2' |
H6 |
1.100 |
1.090 |
| O2' |
H7 |
0.950 |
0.967 |
| C1' |
H8 |
1.100 |
1.090 |
| N3 |
H9 |
1.000 |
0.970 |
| C6 |
H10 |
1.080 |
1.080 |
| C22 |
H11 |
1.080 |
1.080 |
| C33 |
H12 |
1.080 |
1.081 |
| C44 |
H13 |
1.080 |
1.080 |
| OP1 |
H14 |
0.950 |
0.966 |
| P |
OP3 |
|
1.610 |
| OP3 |
HOP3 |
|
0.967 |
Bond Angles for 75B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
|
109.5 |
| OP2 |
P |
OP3 |
|
109.5 |
| P |
O5' |
C5' |
121.2 |
123.0 |
| O5' |
P |
OP3 |
|
109.4 |
| C33 |
C22 |
SE1 |
105.1 |
102.1 |
| C33 |
C22 |
H11 |
127.5 |
129.0 |
| C33 |
C44 |
C55 |
116.4 |
121.6 |
| C44 |
C33 |
H12 |
121.3 |
118.9 |
| C33 |
C44 |
H13 |
121.8 |
119.2 |
| C22 |
SE1 |
C55 |
95.5 |
92.2 |
| SE1 |
C22 |
H11 |
127.4 |
129.0 |
| C55 |
C44 |
H13 |
121.8 |
119.2 |
| O5' |
C5' |
C4' |
111.1 |
109.4 |
| O5' |
C5' |
H1 |
109.1 |
109.5 |
| O5' |
C5' |
H2 |
109.0 |
109.5 |
| C5' |
C4' |
O4' |
110.3 |
109.9 |
| C5' |
C4' |
C3' |
116.7 |
109.9 |
| C4' |
C5' |
H1 |
109.1 |
109.4 |
| C4' |
C5' |
H2 |
109.1 |
109.5 |
| C5' |
C4' |
H3 |
108.5 |
109.9 |
| O4' |
C4' |
C3' |
103.4 |
107.3 |
| C4' |
O4' |
C1' |
109.7 |
107.0 |
| O4' |
C4' |
H3 |
109.2 |
109.8 |
| C4' |
C3' |
O3' |
112.8 |
110.5 |
| C4' |
C3' |
C2' |
102.1 |
104.2 |
| C3' |
C4' |
H3 |
108.5 |
110.0 |
| C4' |
C3' |
H4 |
109.0 |
110.4 |
| O4' |
C1' |
C2' |
107.4 |
103.5 |
| O4' |
C1' |
H8 |
110.1 |
110.6 |
| C5 |
C6 |
H10 |
120.8 |
120.3 |
| O3' |
C3' |
C2' |
113.5 |
110.5 |
| O3' |
C3' |
H4 |
110.4 |
110.4 |
| C3' |
O3' |
H5 |
109.5 |
114.0 |
| C3' |
C2' |
O2' |
108.9 |
110.9 |
| C2' |
C3' |
H4 |
108.8 |
110.6 |
| C3' |
C2' |
H6 |
111.9 |
110.9 |
| N1 |
C1' |
H8 |
109.0 |
110.7 |
| N1 |
C2 |
N3 |
122.9 |
121.9 |
| N1 |
C2 |
O2 |
120.8 |
119.0 |
| C1' |
C2' |
H6 |
111.8 |
111.0 |
| C4 |
N3 |
H9 |
119.4 |
119.7 |
| O2' |
C2' |
H6 |
113.8 |
110.8 |
| C2' |
O2' |
H7 |
109.5 |
114.0 |
| O2 |
C2 |
N3 |
116.3 |
119.1 |
| C2 |
N3 |
H9 |
119.4 |
119.9 |
| H1 |
C5' |
H2 |
109.5 |
109.5 |
| P |
OP3 |
HOP3 |
|
114.1 |
Torsion Angles for 75B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP1 |
OP3 |
|
120.1 |
| O5' |
P |
OP1 |
OP3 |
|
240.1 |
| OP1 |
P |
OP3 |
HOP3 |
|
300.0 |
| OP1 |
P |
OP2 |
OP3 |
|
240.0 |
| O5' |
P |
OP2 |
OP3 |
|
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
|
180.0 |
| OP1 |
P |
O5' |
OP3 |
|
120.0 |
| OP2 |
P |
O5' |
OP3 |
|
240.0 |
| P |
O5' |
C5' |
C4' |
189.0 |
180.0 |
| P |
O5' |
C5' |
H1 |
309.3 |
299.9 |
| P |
O5' |
C5' |
H2 |
68.8 |
60.0 |
| O5' |
P |
OP3 |
HOP3 |
|
60.0 |
| C33 |
C22 |
SE1 |
C55 |
1.0 |
360.0 |
| SE1 |
C22 |
C33 |
H11 |
180.0 |
180.3 |
| C44 |
C33 |
C22 |
SE1 |
0.7 |
0.0 |
| C44 |
C33 |
C22 |
H11 |
180.7 |
179.7 |
| C55 |
C44 |
C33 |
H13 |
180.0 |
180.1 |
| C33 |
C22 |
SE1 |
H11 |
180.0 |
179.7 |
| C55 |
C44 |
C33 |
H12 |
177.2 |
180.0 |
| C33 |
C44 |
C55 |
H13 |
180.0 |
179.9 |
| C22 |
SE1 |
C55 |
C44 |
357.7 |
0.0 |
| C5' |
O5' |
P |
OP3 |
|
65.1 |
| O5' |
C5' |
C4' |
O4' |
301.8 |
66.4 |
| O5' |
C5' |
C4' |
C3' |
59.4 |
184.3 |
| C4' |
C5' |
O5' |
H1 |
239.8 |
240.1 |
| C4' |
C5' |
O5' |
H2 |
120.2 |
120.0 |
| O5' |
C5' |
C4' |
H3 |
182.2 |
305.4 |
| H1 |
C5' |
O5' |
H2 |
240.5 |
240.0 |
| O5' |
C5' |
C4' |
H1 |
120.2 |
119.9 |
| O5' |
C5' |
C4' |
H2 |
239.8 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
242.4 |
242.2 |
| C5' |
C4' |
O4' |
C1' |
152.6 |
145.9 |
| O4' |
C4' |
C5' |
H3 |
119.6 |
121.0 |
| C5' |
C4' |
C3' |
O3' |
77.8 |
119.8 |
| C5' |
C4' |
C3' |
C2' |
199.9 |
238.6 |
| C3' |
C4' |
C5' |
H3 |
237.2 |
238.9 |
| C5' |
C4' |
C3' |
H4 |
314.8 |
357.4 |
| H1 |
C5' |
C4' |
H2 |
119.5 |
120.0 |
| C55 |
SE1 |
C22 |
H11 |
180.9 |
180.3 |
| SE1 |
C55 |
C44 |
H13 |
183.1 |
180.1 |
| C55 |
C5 |
C6 |
H10 |
1.6 |
359.4 |
| C5' |
C4' |
O4' |
C3' |
125.5 |
119.5 |
| O4' |
C4' |
C5' |
H1 |
181.6 |
306.5 |
| O4' |
C4' |
C5' |
H2 |
62.0 |
186.5 |
| C5' |
C4' |
O4' |
H3 |
240.9 |
238.9 |
| O4' |
C4' |
C3' |
O3' |
199.1 |
239.3 |
| O4' |
C4' |
C3' |
C2' |
321.2 |
358.0 |
| C3' |
C4' |
O4' |
H3 |
115.3 |
119.5 |
| O4' |
C4' |
C3' |
H4 |
76.2 |
116.8 |
| C4' |
O4' |
C1' |
C2' |
356.1 |
320.0 |
| C4' |
O4' |
C1' |
H8 |
113.8 |
78.4 |
| C5' |
C4' |
C3' |
O4' |
238.7 |
240.5 |
| C3' |
C4' |
C5' |
H1 |
299.2 |
64.3 |
| C3' |
C4' |
C5' |
H2 |
179.6 |
304.3 |
| C5' |
C4' |
C3' |
H3 |
122.8 |
121.1 |
| C3' |
C4' |
O4' |
C1' |
27.1 |
26.5 |
| O4' |
C4' |
C3' |
H3 |
244.2 |
240.6 |
| O3' |
C3' |
C4' |
C2' |
237.9 |
241.3 |
| O3' |
C3' |
C4' |
H4 |
122.9 |
122.5 |
| C4' |
C3' |
O3' |
H5 |
180.0 |
180.1 |
| C4' |
C3' |
C2' |
O2' |
281.9 |
220.9 |
| C2' |
C3' |
C4' |
H4 |
245.0 |
241.2 |
| C4' |
C3' |
C2' |
H6 |
155.2 |
97.4 |
| C1' |
O4' |
C4' |
C3' |
27.1 |
26.5 |
| C1' |
O4' |
C4' |
H3 |
271.7 |
267.0 |
| N1 |
C1' |
O4' |
H8 |
119.3 |
123.0 |
| O4' |
C1' |
C2' |
H6 |
220.0 |
278.8 |
| C5 |
C4 |
N3 |
H9 |
179.6 |
179.9 |
| C6 |
N1 |
C1' |
H8 |
140.0 |
356.2 |
| C4' |
C3' |
O3' |
C2' |
115.4 |
114.8 |
| O3' |
C3' |
C4' |
H3 |
314.9 |
358.7 |
| C4' |
C3' |
O3' |
H4 |
237.9 |
237.5 |
| O3' |
C3' |
C2' |
O2' |
43.5 |
339.6 |
| C2' |
C3' |
O3' |
H4 |
122.4 |
122.7 |
| O3' |
C3' |
C2' |
H6 |
276.8 |
216.1 |
| C4' |
C3' |
C2' |
O3' |
238.4 |
241.3 |
| C2' |
C3' |
C4' |
H3 |
77.0 |
117.4 |
| C4' |
C3' |
C2' |
H4 |
115.1 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
339.6 |
37.0 |
| O3' |
C3' |
C2' |
H4 |
236.7 |
237.4 |
| C2' |
C3' |
O3' |
H5 |
64.5 |
65.3 |
| C1' |
C2' |
C3' |
H6 |
240.5 |
241.7 |
| O2' |
C2' |
C3' |
H6 |
126.7 |
123.5 |
| C3' |
C2' |
O2' |
H7 |
180.0 |
298.6 |
| O4' |
C1' |
N1 |
H8 |
240.0 |
237.0 |
| N1 |
C1' |
C2' |
H6 |
340.1 |
37.3 |
| C2 |
N1 |
C1' |
H8 |
319.6 |
176.5 |
| O2 |
C2 |
N1 |
N3 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
H9 |
180.6 |
180.0 |
| O4' |
C1' |
C2' |
H8 |
118.8 |
118.5 |
| C1' |
C2' |
C3' |
H4 |
280.6 |
220.4 |
| C3' |
C2' |
C1' |
H6 |
119.6 |
118.3 |
| O2' |
C2' |
C1' |
H6 |
234.1 |
236.4 |
| C1' |
C2' |
O2' |
H7 |
70.3 |
185.8 |
| O4 |
C4 |
N3 |
H9 |
359.9 |
0.0 |
| C2 |
N3 |
C4 |
H9 |
180.0 |
180.0 |
| O4' |
C1' |
C2' |
O2' |
94.1 |
155.2 |
| O2' |
C2' |
C3' |
H4 |
166.8 |
102.2 |
| C3' |
C2' |
O2' |
H6 |
234.4 |
236.4 |
| C1' |
C2' |
O2' |
H6 |
124.7 |
123.7 |
| N1 |
C2 |
N3 |
O2 |
180.0 |
180.0 |
| C4 |
N3 |
C2 |
H9 |
180.0 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
180.0 |
180.0 |
| O2 |
C2 |
N3 |
H9 |
0.5 |
0.1 |
| O5' |
C5' |
H1 |
C4' |
238.5 |
240.1 |
| O5' |
C5' |
H1 |
H2 |
119.2 |
120.0 |
| H1 |
C5' |
C4' |
O4' |
181.6 |
306.5 |
| H1 |
C5' |
C4' |
C3' |
299.2 |
64.3 |
| C4' |
C5' |
H1 |
H2 |
240.7 |
240.0 |
| H1 |
C5' |
C4' |
H3 |
62.0 |
185.5 |
| O5' |
C5' |
H2 |
C4' |
121.5 |
120.0 |
| O5' |
C5' |
H2 |
H1 |
240.8 |
240.0 |
| H2 |
C5' |
C4' |
O4' |
62.0 |
186.5 |
| H2 |
C5' |
C4' |
C3' |
179.6 |
304.3 |
| C4' |
C5' |
H2 |
H1 |
119.3 |
120.0 |
| H2 |
C5' |
C4' |
H3 |
302.5 |
65.4 |
| C5' |
C4' |
H3 |
O4' |
120.3 |
121.1 |
| C5' |
C4' |
H3 |
C3' |
232.3 |
238.9 |
| H3 |
C4' |
C5' |
H1 |
62.0 |
185.5 |
| H3 |
C4' |
C5' |
H2 |
302.5 |
65.4 |
| O4' |
C4' |
H3 |
C3' |
112.0 |
117.8 |
| H3 |
C4' |
O4' |
C1' |
271.7 |
267.0 |
| H3 |
C4' |
C3' |
O3' |
314.9 |
358.7 |
| H3 |
C4' |
C3' |
C2' |
77.0 |
117.4 |
| H3 |
C4' |
C3' |
H4 |
192.0 |
236.3 |
| C4' |
C3' |
H4 |
O3' |
124.3 |
122.5 |
| C4' |
C3' |
H4 |
C2' |
249.5 |
245.2 |
| H4 |
C3' |
C4' |
H3 |
192.0 |
236.3 |
| O3' |
C3' |
H4 |
C2' |
125.1 |
122.7 |
| H4 |
C3' |
O3' |
H5 |
302.1 |
302.5 |
| H4 |
C3' |
C2' |
O2' |
166.8 |
102.2 |
| H4 |
C3' |
C2' |
H6 |
40.1 |
338.7 |
| H5 |
O3' |
C3' |
C2' |
64.5 |
65.3 |
| H5 |
O3' |
C3' |
H4 |
302.1 |
302.5 |
| C3' |
C2' |
H6 |
O2' |
124.0 |
123.6 |
| H6 |
C2' |
C3' |
H4 |
40.1 |
338.7 |
| H6 |
C2' |
O2' |
H7 |
305.6 |
62.1 |
| H7 |
O2' |
C2' |
H6 |
305.6 |
62.1 |
| O4' |
C1' |
H8 |
C2' |
242.9 |
246.0 |
| H8 |
C1' |
C2' |
H6 |
101.2 |
160.3 |
| C33 |
C22 |
H11 |
SE1 |
180.0 |
180.4 |
| H11 |
C22 |
SE1 |
C55 |
180.9 |
180.3 |
| H12 |
C33 |
C22 |
SE1 |
180.7 |
180.0 |
| H12 |
C33 |
C22 |
H11 |
0.7 |
359.7 |
| H12 |
C33 |
C44 |
C55 |
177.2 |
180.0 |
| H12 |
C33 |
C44 |
H13 |
357.3 |
359.9 |
| C33 |
C44 |
H13 |
C55 |
180.0 |
180.1 |
| H13 |
C44 |
C33 |
H12 |
357.3 |
359.9 |
| H14 |
OP1 |
P |
OP3 |
|
300.0 |
| OP3 |
P |
O5' |
C5' |
|
65.1 |