Atom Nomenclature for 71E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 71E

Atom Name (V3) Atom Name (V2)
CBE C1
CAY C2
CBF C3
CBG C4
CAX C5
NAV N1
C C6
O O1
CA C7
N N2
CBO C8
OBQ O2
CBP C9
OBS O3
CBR C10
CBU C11
CBT C12
CB C13
CG C14
CD1 C15
CAF C16
CD2 C17
CAD C18
CAE C19
OAG O4
CAH C20
NAJ N3
CAK C21
CAM C22
CAN C23
CAO C24
FAQ F1
CAP C25
CAL C26
CAI C27
CBB C28
OBA O5
CAZ C29
NBD N4
CBC C30
CBH C31
NBL N5
OBI O6
CBJ C32
CBK C33
CBM C34
OBN O7
HD3 H1
HD4 H2
HBE H3
HD6 H4
HD5 H5
HBF H6
HBG H7
HD8 H8
HD7 H9
HAX H10
HAV H11
HA H12
H H13
HBP H14
HBS H15
HBR H16
HEC H17
HED H18
HBU H19
HBT H20
HEB H21
HEA H22
HB2 H23
HB1 H24
HD1 H25
HD2 H26
HAD H27
HAH H28
HAJ H29
HAM H30
HAN H31
HAP H32
HBJ H33
HBM H34
HD9 H35
HBN H36