PDB Chemical Component 70U

Ideal Model

Chemical Description

Name 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE
Formula C12 H17 N2 O10 P S
Formal charge 0
Molecular weight 412.310 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-(2-methoxy-2-oxoethyl)-1-(5-O-phosphono-beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one
Systematic name (OpenEye OEToolkits) methyl 2-[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-4-oxo-2-sulfanylidene-pyrimidin-5-yl]ethanoate

Chemical Descriptors

Stereo SMILES (CACTVS) COC(=O)CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=S)NC1=O
SMILES (CACTVS) COC(=O)CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=S)NC1=O
Stereo SMILES (OpenEye) COC(=O)CC1=CN(C(=S)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C12H17N2O10PS/c1-22-7(15)2-5-3-14(12(26)13-10(5)18)11-9(17)8(16)6(24-11)4-23-25(19,20)21/h3,6,8-9,11,16-17H,2,4H2,1H3,(H,13,18,26)(H2,19,20,21)/t6-,8-,9-,11-/m1/s1
InChIKey descriptor RWXSPKNHAJLKOR-PNHWDRBUSA-N

Status Information

Last modified 2011-06-04
Created 2000-08-08
Release status REL
Model PDB code 1FIR
Processing site RCSB