PDB Chemical Component 70U

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 70U

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.382 1.344
N1 C6 1.372 1.368
N1 C1' 1.455 1.464
C2 S2 1.241 1.711
C2 N3 1.383 1.346
N3 C4 1.390 1.349
N3 HN3 1.020 0.969
C4 O4 1.222 1.218
C4 C5 1.453 1.416
C5 C6 1.327 1.349
C5 C5M 1.496 1.507
C6 H6 1.102 1.080
C5M C8 1.504 1.506
C5M H71 1.114 1.090
C5M H72 1.115 1.090
C8 O8 1.250 1.207
C8 O9 1.418 1.343
O9 C9 1.419 1.452
C9 H91 1.114 1.090
C9 H92 1.116 1.090
C9 H93 1.115 1.091
C1' C2' 1.524 1.544
C1' O4' 1.417 1.444
C1' H1' 1.115 1.090
O2' C2' 1.410 1.428
O2' HO2' 0.950 0.968
C2' C3' 1.522 1.547
C2' H2' 1.116 1.090
O3' C3' 1.415 1.429
O3' HO3' 0.950 0.968
C3' C4' 1.511 1.545
C3' H3' 1.115 1.089
C4' O4' 1.446 1.444
C4' C5' 1.503 1.530
C4' H4' 1.115 1.091
C5' O5' 1.417 1.428
C5' H5' 1.115 1.090
C5' H5'' 1.114 1.090
O5' P 1.594 1.610
P OP1 1.487 1.480
P OP2 1.491 1.610
P OP3 1.604 1.610
OP2 HOP2 0.949 0.967
OP3 HOP3 0.949 0.967

Bond Angles for 70U

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.9 120.6
C2 N1 C1' 119.7 119.7
N1 C2 S2 123.2 119.5
N1 C2 N3 114.0 121.0
C6 N1 C1' 118.5 119.7
N1 C6 C5 124.1 119.7
N1 C6 H6 119.7 120.1
N1 C1' C2' 111.3 110.4
N1 C1' O4' 107.5 110.4
N1 C1' H1' 109.0 110.4
S2 C2 N3 122.7 119.5
C2 N3 C4 126.7 120.2
C2 N3 HN3 116.4 119.9
C4 N3 HN3 116.9 119.9
N3 C4 O4 119.9 120.3
N3 C4 C5 115.3 119.4
O4 C4 C5 124.8 120.3
C4 C5 C6 118.0 119.1
C4 C5 C5M 120.1 120.4
C6 C5 C5M 121.9 120.5
C5 C6 H6 116.2 120.1
C5 C5M C8 114.3 109.5
C5 C5M H71 110.4 109.4
C5 C5M H72 110.4 109.5
C8 C5M H71 110.4 109.5
C8 C5M H72 110.4 109.5
C5M C8 O8 119.7 120.0
C5M C8 O9 117.5 120.0
H71 C5M H72 99.9 109.4
O8 C8 O9 122.8 120.0
C8 O9 C9 101.4 120.0
O9 C9 H91 101.5 109.5
O9 C9 H92 115.3 109.5
O9 C9 H93 115.3 109.5
H91 C9 H92 115.3 109.5
H91 C9 H93 115.3 109.4
H92 C9 H93 95.1 109.4
C2' C1' O4' 107.4 104.9
C2' C1' H1' 109.0 110.3
C1' C2' O2' 109.2 110.8
C1' C2' C3' 101.4 104.0
C1' C2' H2' 116.5 110.4
O4' C1' H1' 112.7 110.3
C1' O4' C4' 109.3 105.3
C2' O2' HO2' 109.1 106.8
O2' C2' C3' 114.1 110.5
O2' C2' H2' 104.3 110.4
C3' C2' H2' 111.8 110.5
C2' C3' O3' 110.9 110.5
C2' C3' C4' 101.8 104.0
C2' C3' H3' 113.4 110.6
C3' O3' HO3' 110.9 106.8
O3' C3' C4' 109.3 110.5
O3' C3' H3' 106.5 110.5
C4' C3' H3' 115.0 110.5
C3' C4' O4' 104.0 104.8
C3' C4' C5' 115.9 110.5
C3' C4' H4' 109.1 110.3
O4' C4' C5' 110.0 110.4
O4' C4' H4' 115.2 110.4
C5' C4' H4' 103.0 110.3
C4' C5' O5' 110.8 109.5
C4' C5' H5' 111.7 109.5
C4' C5' H5'' 111.7 109.4
O5' C5' H5' 111.7 109.5
O5' C5' H5'' 111.7 109.5
C5' O5' P 119.7 106.8
H5' C5' H5'' 98.7 109.4
O5' P OP1 105.8 109.4
O5' P OP2 111.2 109.5
O5' P OP3 104.4 109.5
OP1 P OP2 119.6 109.5
OP1 P OP3 109.3 109.5
OP2 P OP3 105.6 109.5
P OP2 HOP2 111.2 106.8
P OP3 HOP3 104.4 106.8

Torsion Angles for 70U

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 179.2 180.0
C2 N1 C6 C5 358.2 360.0
C2 N1 C6 H6 178.2 180.0
C2 N1 C1' C2' 65.6 301.5
C2 N1 C1' O4' 182.9 57.1
C2 N1 C1' H1' 305.4 179.3
S2 C2 N1 N3 179.4 180.1
N1 C2 N3 C4 1.3 359.8
N1 C2 N3 HN3 181.3 180.0
C2 N1 C6 C1' 180.8 180.0
C6 N1 C2 S2 179.4 180.0
C6 N1 C2 N3 359.9 360.0
C6 N1 C1' C2' 246.4 121.5
C6 N1 C1' O4' 3.7 237.1
C6 N1 C1' H1' 126.1 359.2
C4 C5 C6 N1 2.5 0.3
N1 C6 C5 C5M 184.4 180.0
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 179.2 180.0
C1' N1 C2 S2 0.2 0.0
C1' N1 C2 N3 180.7 179.9
C1' N1 C6 C5 177.4 180.0
C1' N1 C6 H6 357.4 0.0
C2' C1' N1 O4' 242.7 244.5
C2' C1' N1 H1' 120.2 122.3
N1 C1' C2' O2' 214.0 261.5
N1 C1' C2' C3' 93.3 142.7
N1 C1' C2' H2' 331.8 24.2
O4' C1' N1 H1' 237.6 237.8
N1 C1' O4' C4' 240.4 200.7
S2 C2 N1 C6 179.4 180.0
S2 C2 N1 C1' 0.2 0.0
N1 C2 S2 N3 180.6 179.9
S2 C2 N3 C4 181.8 179.7
S2 C2 N3 HN3 1.8 359.9
N3 C2 N1 C6 359.9 360.0
N3 C2 N1 C1' 180.7 179.9
N1 C2 N3 S2 179.4 180.1
C4 N3 C2 HN3 180.0 179.8
C2 N3 C4 O4 178.7 180.0
C2 N3 C4 C5 359.4 0.5
C2 N3 C4 HN3 180.0 180.2
O4 C4 N3 C5 179.4 179.5
N3 C4 C5 C6 358.8 359.5
N3 C4 C5 C5M 176.8 179.7
C2 N3 HN3 C4 180.0 179.8
HN3 N3 C4 O4 358.7 359.8
HN3 N3 C4 C5 179.4 180.3
O4 C4 N3 HN3 358.7 359.8
N3 C4 O4 C5 180.7 180.5
O4 C4 C5 C6 179.4 180.0
O4 C4 C5 C5M 357.5 0.3
N1 C6 C5 C4 2.5 0.3
C5 C4 N3 HN3 179.4 180.3
N3 C4 C5 O4 179.3 179.5
C6 C5 C4 C5M 181.9 179.7
C4 C5 C6 H6 182.4 180.3
C4 C5 C5M C8 48.1 269.7
C4 C5 C5M H71 173.4 149.7
C4 C5 C5M H72 282.9 29.8
C5 C6 N1 C1' 177.4 180.0
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 C5M 178.0 180.3
C6 C5 C5M C8 226.1 90.0
C6 C5 C5M H71 351.4 330.0
C6 C5 C5M H72 100.9 210.0
C4 C5 C5M C6 182.0 179.7
C5M C5 C6 H6 4.4 360.0
C8 C5M C5 H71 234.7 120.0
C8 C5M C5 H72 125.2 240.0
C5 C5M C8 O8 270.9 360.0
C5 C5M C8 O9 91.1 180.0
H71 C5M C5 H72 250.5 119.9
H6 C6 N1 C1' 357.4 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C5M 4.4 360.0
C5 C5M C8 H71 125.2 240.0
C5 C5M C8 H72 234.8 120.0
H71 C5M C8 H72 109.5 240.0
O8 C8 C5M O9 179.9 180.0
C5M C8 O9 C9 255.7 180.0
C5 C5M H71 C8 232.6 120.0
C5 C5M H71 H72 116.3 240.0
C8 C5M H71 H72 243.7 120.0
H71 C5M C8 O8 145.7 120.0
H71 C5M C8 O9 325.8 300.0
C5 C5M H72 C8 127.4 240.0
C5 C5M H72 H71 243.7 119.9
C8 C5M H72 H71 116.3 240.0
H72 C5M C8 O8 36.1 240.0
H72 C5M C8 O9 216.3 60.0
O8 C8 C5M H71 145.7 120.0
O8 C8 C5M H72 36.1 240.0
C5M C8 O8 O9 180.2 180.0
O8 C8 O9 C9 75.9 0.0
O9 C8 C5M H71 325.8 300.0
O9 C8 C5M H72 216.3 60.0
C5M C8 O9 O8 179.8 180.0
C8 O9 C9 H91 180.0 179.9
C8 O9 C9 H92 305.3 300.0
C8 O9 C9 H93 54.7 60.0
H91 C9 O9 H92 234.7 239.9
H91 C9 O9 H93 125.3 119.9
H92 C9 O9 H93 250.6 240.0
O9 C9 H91 H92 125.3 120.1
O9 C9 H91 H93 234.7 240.0
H92 C9 H91 H93 109.4 120.0
O9 C9 H92 H91 242.2 239.9
O9 C9 H92 H93 121.1 120.0
H91 C9 H92 H93 238.9 240.1
O9 C9 H93 H91 117.8 120.0
O9 C9 H93 H92 238.9 240.0
H91 C9 H93 H92 121.1 120.0
N1 C1' C2' O4' 117.3 118.9
N1 C1' C2' H1' 239.8 237.7
O4' C1' C2' H1' 122.4 118.8
C2' C1' O4' C4' 0.2 319.6
C1' C2' O2' HO2' 180.0 183.9
O2' C2' C1' C3' 120.7 118.8
O2' C2' C1' H2' 242.2 237.3
C3' C2' C1' H2' 121.5 118.5
C1' C2' C3' O3' 153.6 118.8
C1' C2' C3' C4' 37.4 0.1
C1' C2' C3' H3' 273.3 241.5
N1 C1' O4' C2' 240.2 241.1
N1 C1' O4' H1' 120.1 122.2
C2' C1' O4' H1' 239.9 241.2
O4' C1' C2' O2' 96.7 142.6
O4' C1' C2' C3' 336.0 23.8
O4' C1' C2' H2' 214.4 265.3
C3' C4' O4' C1' 24.1 40.5
C1' O4' C4' C5' 148.9 159.5
C1' O4' C4' H4' 264.8 281.7
N1 C1' H1' C2' 121.6 122.3
N1 C1' H1' O4' 240.8 237.8
C2' C1' H1' O4' 119.2 115.5
H1' C1' C2' O2' 334.2 23.8
H1' C1' C2' C3' 213.5 265.0
H1' C1' C2' H2' 92.0 146.5
H1' C1' O4' C4' 120.4 78.4
O2' C2' C1' O4' 96.7 142.6
O2' C2' C1' H1' 334.2 23.8
C1' C2' O2' C3' 247.4 245.2
C1' C2' O2' H2' 125.1 122.6
C3' C2' O2' H2' 237.8 237.4
O2' C2' C3' O3' 36.4 359.8
O2' C2' C3' C4' 280.2 241.2
O2' C2' C3' H3' 156.1 122.5
HO2' O2' C2' C3' 292.6 298.6
HO2' O2' C2' H2' 54.8 61.2
C3' C2' C1' O4' 336.0 23.8
C3' C2' C1' H1' 213.5 265.0
C1' C2' C3' O2' 117.2 119.0
C1' C2' C3' H2' 235.3 241.5
C3' C2' O2' HO2' 292.6 298.6
O2' C2' C3' H2' 118.1 122.6
C2' C3' O3' HO3' 180.0 65.4
O3' C3' C2' C4' 116.2 118.7
O3' C3' C2' H3' 240.3 237.3
C4' C3' C2' H3' 124.1 118.7
C2' C3' C4' O4' 321.7 336.0
C2' C3' C4' C5' 200.7 217.0
C2' C3' C4' H4' 85.0 94.8
H2' C2' C1' O4' 214.4 265.3
H2' C2' C1' H1' 92.0 146.5
C1' C2' H2' O2' 239.6 237.1
C1' C2' H2' C3' 115.9 114.5
H2' C2' O2' HO2' 54.8 61.2
O2' C2' H2' C3' 236.3 237.4
H2' C2' C3' O3' 278.4 237.3
H2' C2' C3' C4' 162.1 118.6
H2' C2' C3' H3' 38.1 359.9
O3' C3' C2' H2' 278.4 237.3
C2' C3' O3' C4' 248.5 245.4
C2' C3' O3' H3' 123.8 122.8
C4' C3' O3' H3' 235.3 237.4
O3' C3' C4' O4' 204.3 217.3
O3' C3' C4' C5' 83.4 98.3
O3' C3' C4' H4' 327.6 336.1
HO3' O3' C3' C4' 291.5 180.1
HO3' O3' C3' H3' 56.2 302.7
C1' O4' C4' C3' 24.1 40.5
C4' C3' C2' H2' 162.1 118.6
C2' C3' C4' O3' 117.4 118.7
C2' C3' C4' H3' 237.0 241.3
C4' C3' O3' HO3' 291.5 180.1
O3' C3' C4' H3' 119.6 122.6
O4' C4' C3' C5' 120.9 119.0
O4' C4' C3' H4' 236.6 241.2
C5' C4' C3' H4' 115.7 122.2
C3' C4' C5' O5' 56.6 176.9
C3' C4' C5' H5' 181.9 297.0
C3' C4' C5' H5'' 291.4 56.9
H3' C3' C2' H2' 38.1 359.9
C2' C3' H3' O3' 237.8 237.3
C2' C3' H3' C4' 116.6 114.7
H3' C3' O3' HO3' 56.2 302.7
O3' C3' H3' C4' 238.8 237.4
H3' C3' C4' O4' 84.6 94.7
H3' C3' C4' C5' 323.7 335.8
H3' C3' C4' H4' 208.0 213.5
C4' O4' C1' H1' 120.4 78.4
O4' C4' C3' H3' 84.6 94.7
C3' C4' O4' C5' 235.2 241.0
C3' C4' O4' H4' 119.3 118.8
C5' C4' O4' H4' 244.1 237.8
O4' C4' C5' O5' 299.0 61.4
O4' C4' C5' H5' 64.3 181.5
O4' C4' C5' H5'' 173.8 301.4
C5' C4' C3' H3' 323.7 335.8
C3' C4' C5' O4' 117.6 115.5
C3' C4' C5' H4' 240.9 237.8
O4' C4' C5' H4' 123.3 122.3
O5' C5' C4' H5' 234.8 240.0
O5' C5' C4' H5'' 125.2 120.0
C4' C5' O5' P 182.4 180.0
H5' C5' C4' H5'' 250.5 240.0
H4' C4' C3' H3' 208.0 213.5
C3' C4' H4' O4' 243.6 244.6
C3' C4' H4' C5' 123.8 122.3
O4' C4' H4' C5' 240.2 237.7
H4' C4' C5' O5' 175.7 299.1
H4' C4' C5' H5' 301.0 59.2
H4' C4' C5' H5'' 50.5 179.2
O5' C5' C4' H4' 175.7 299.1
C4' C5' O5' H5' 125.2 120.1
C4' C5' O5' H5'' 234.8 240.0
H5' C5' O5' H5'' 109.5 120.0
C5' O5' P OP1 33.8 60.0
C5' O5' P OP2 262.5 180.0
C5' O5' P OP3 149.1 300.0
H5' C5' C4' H4' 301.0 59.2
C4' C5' H5' O5' 235.3 239.9
C4' C5' H5' H5'' 117.6 120.0
O5' C5' H5' H5'' 242.4 240.0
H5' C5' O5' P 57.2 59.9
H5'' C5' C4' H4' 50.5 179.2
C4' C5' H5'' O5' 124.7 120.0
C4' C5' H5'' H5' 242.4 240.0
O5' C5' H5'' H5' 117.6 120.0
H5'' C5' O5' P 307.6 300.0
P O5' C5' H5' 57.2 59.9
P O5' C5' H5'' 307.6 300.0
OP1 P O5' OP2 131.3 240.0
OP1 P O5' OP3 244.7 120.0
OP2 P O5' OP3 113.4 239.9
O5' P OP2 HOP2 180.0 180.0
O5' P OP3 HOP3 180.0 300.0
O5' P OP1 OP2 233.7 120.0
O5' P OP1 OP3 111.9 240.0
OP2 P OP1 OP3 238.2 120.0
OP1 P OP2 HOP2 56.3 299.9
OP1 P OP3 HOP3 292.8 180.0
O5' P OP2 OP1 123.7 240.1
O5' P OP2 OP3 247.3 120.1
OP1 P OP2 OP3 123.6 240.0
OP2 P OP3 HOP3 62.7 60.0
O5' P OP3 OP1 247.2 119.9
O5' P OP3 OP2 117.3 240.0
OP1 P OP3 OP2 230.1 120.0
OP3 P OP2 HOP2 292.7 59.9
HOP2 OP2 P OP3 292.7 59.9