PDB Chemical Component 708
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 708
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL38 |
C37 |
1.784 |
1.737 |
| C25 |
C37 |
1.398 |
1.398 |
| C37 |
C39 |
1.385 |
1.379 |
| C26 |
C25 |
1.481 |
1.473 |
| C25 |
C24 |
1.393 |
1.398 |
| C27 |
C26 |
1.328 |
1.342 |
| C26 |
H26 |
1.080 |
1.080 |
| C28 |
C27 |
1.481 |
1.474 |
| C27 |
H27 |
1.080 |
1.080 |
| C33 |
C28 |
1.392 |
1.394 |
| C29 |
C28 |
1.397 |
1.399 |
| C32 |
C33 |
1.389 |
1.394 |
| C33 |
H33 |
1.079 |
1.080 |
| C34 |
C32 |
1.498 |
1.478 |
| C31 |
C32 |
1.391 |
1.397 |
| O35 |
C34 |
1.225 |
1.215 |
| C34 |
O36 |
1.337 |
1.347 |
| O36 |
HO36 |
0.950 |
0.966 |
| C31 |
C30 |
1.396 |
1.381 |
| C31 |
H31 |
1.080 |
1.080 |
| C30 |
C29 |
1.396 |
1.380 |
| C30 |
H30 |
1.080 |
1.080 |
| C29 |
H29 |
1.080 |
1.080 |
| C24 |
C23 |
1.392 |
1.377 |
| C24 |
H24 |
1.080 |
1.080 |
| C23 |
C22 |
1.396 |
1.389 |
| C23 |
H23 |
1.080 |
1.080 |
| C39 |
C22 |
1.379 |
1.388 |
| C39 |
H39 |
1.080 |
1.081 |
| C22 |
O21 |
1.358 |
1.359 |
| O21 |
C20 |
1.416 |
1.429 |
| C20 |
C19 |
1.502 |
1.507 |
| C20 |
H20 |
1.099 |
1.091 |
| C20 |
H20A |
1.100 |
1.089 |
| C4 |
C19 |
1.472 |
1.354 |
| C19 |
C7 |
1.406 |
1.414 |
| C2 |
C4 |
1.480 |
1.507 |
| C4 |
O5 |
1.350 |
1.340 |
| C1 |
C2 |
1.529 |
1.530 |
| C2 |
C3 |
1.527 |
1.529 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C3 |
H3B |
1.100 |
1.090 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C7 |
C8 |
1.506 |
1.507 |
| C7 |
N6 |
1.356 |
1.301 |
| O5 |
N6 |
1.434 |
1.211 |
| C8 |
S9 |
1.834 |
1.810 |
| C8 |
H8 |
1.100 |
1.091 |
| C8 |
H8A |
1.100 |
1.089 |
| C11 |
S9 |
1.823 |
1.810 |
| S9 |
O10 |
1.789 |
1.659 |
| O10 |
HO10 |
0.950 |
0.967 |
| C17 |
C11 |
1.391 |
1.383 |
| C12 |
C11 |
1.384 |
1.383 |
| C16 |
C17 |
1.387 |
1.384 |
| CL18 |
C17 |
1.790 |
1.735 |
| C15 |
C16 |
1.388 |
1.382 |
| C16 |
H16 |
1.080 |
1.081 |
| C15 |
C14 |
1.387 |
1.382 |
| C15 |
H15 |
1.080 |
1.080 |
| C14 |
C12 |
1.387 |
1.385 |
| C14 |
H14 |
1.080 |
1.080 |
| C12 |
CL13 |
1.789 |
1.735 |
| S9 |
HS9 |
1.300 |
1.410 |
Bond Angles for 708
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL38 |
C37 |
C39 |
114.8 |
120.0 |
| C25 |
C37 |
C39 |
121.1 |
119.9 |
| C37 |
C39 |
C22 |
120.2 |
120.1 |
| C37 |
C39 |
H39 |
119.9 |
120.0 |
| C26 |
C25 |
C24 |
115.9 |
120.1 |
| C25 |
C24 |
C23 |
120.5 |
119.9 |
| C25 |
C24 |
H24 |
119.7 |
120.0 |
| C27 |
C26 |
H26 |
119.1 |
120.0 |
| C28 |
C27 |
H27 |
117.9 |
120.0 |
| C32 |
C33 |
H33 |
119.5 |
120.2 |
| C34 |
O36 |
HO36 |
109.5 |
117.1 |
| C30 |
C31 |
H31 |
120.2 |
119.9 |
| C31 |
C30 |
C29 |
120.8 |
120.4 |
| C31 |
C30 |
H30 |
119.6 |
119.8 |
| C29 |
C30 |
H30 |
119.6 |
119.8 |
| C30 |
C29 |
H29 |
120.3 |
119.9 |
| C23 |
C24 |
H24 |
119.7 |
120.0 |
| C24 |
C23 |
C22 |
120.1 |
120.1 |
| C24 |
C23 |
H23 |
119.9 |
120.0 |
| C22 |
C23 |
H23 |
119.9 |
119.9 |
| C23 |
C22 |
C39 |
119.6 |
120.2 |
| C23 |
C22 |
O21 |
123.1 |
119.9 |
| C22 |
C39 |
H39 |
119.9 |
120.0 |
| C39 |
C22 |
O21 |
117.3 |
119.9 |
| C22 |
O21 |
C20 |
122.1 |
117.0 |
| O21 |
C20 |
C19 |
108.5 |
109.5 |
| O21 |
C20 |
H20 |
109.8 |
109.5 |
| O21 |
C20 |
H20A |
110.0 |
109.5 |
| C19 |
C20 |
H20 |
109.8 |
109.5 |
| C19 |
C20 |
H20A |
110.0 |
109.5 |
| C20 |
C19 |
C7 |
128.7 |
128.0 |
| H20 |
C20 |
H20A |
108.7 |
109.4 |
| C4 |
C19 |
C7 |
106.8 |
104.0 |
| C19 |
C7 |
C8 |
126.7 |
126.8 |
| C19 |
C7 |
N6 |
109.9 |
106.4 |
| C2 |
C4 |
O5 |
120.0 |
126.7 |
| C4 |
O5 |
N6 |
111.1 |
111.5 |
| C1 |
C2 |
H2 |
105.3 |
109.4 |
| C3 |
C2 |
H2 |
109.8 |
109.5 |
| C2 |
C3 |
H3 |
109.5 |
109.5 |
| C2 |
C3 |
H3A |
109.5 |
109.5 |
| C2 |
C3 |
H3B |
109.4 |
109.5 |
| H3 |
C3 |
H3A |
109.4 |
109.5 |
| H3 |
C3 |
H3B |
109.5 |
109.4 |
| H3A |
C3 |
H3B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| N6 |
C7 |
C8 |
123.4 |
126.8 |
| C7 |
C8 |
S9 |
108.7 |
109.5 |
| C7 |
C8 |
H8 |
109.7 |
109.4 |
| C7 |
C8 |
H8A |
109.9 |
109.5 |
| S9 |
C8 |
H8 |
109.7 |
109.4 |
| S9 |
C8 |
H8A |
109.9 |
109.5 |
| C8 |
S9 |
O10 |
106.6 |
180.0 |
| C8 |
S9 |
HS9 |
113.5 |
90.0 |
| H8 |
C8 |
H8A |
108.9 |
109.4 |
| C11 |
S9 |
HS9 |
115.7 |
120.0 |
| S9 |
O10 |
HO10 |
109.5 |
114.1 |
| O10 |
S9 |
HS9 |
112.8 |
90.0 |
| C15 |
C16 |
H16 |
120.1 |
120.0 |
| C14 |
C15 |
H15 |
119.9 |
119.9 |
| C15 |
C14 |
C12 |
119.6 |
120.0 |
| C15 |
C14 |
H14 |
120.2 |
120.0 |
| C12 |
C14 |
H14 |
120.2 |
120.0 |
| C14 |
C12 |
CL13 |
119.8 |
120.0 |
Torsion Angles for 708
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C37 |
CL38 |
C39 |
178.3 |
180.3 |
| CL38 |
C37 |
C39 |
C22 |
179.5 |
179.8 |
| CL38 |
C37 |
C39 |
H39 |
359.5 |
0.1 |
| CL38 |
C37 |
C25 |
C39 |
181.8 |
179.7 |
| C25 |
C37 |
C39 |
C22 |
1.1 |
359.5 |
| C25 |
C37 |
C39 |
H39 |
181.1 |
179.8 |
| C23 |
C22 |
C39 |
C37 |
359.9 |
0.6 |
| C22 |
C39 |
C37 |
H39 |
180.0 |
179.7 |
| C37 |
C39 |
C22 |
O21 |
180.0 |
180.2 |
| C26 |
C25 |
C37 |
C39 |
183.5 |
180.3 |
| C26 |
C25 |
C24 |
C23 |
176.9 |
180.0 |
| C26 |
C25 |
C24 |
H24 |
356.9 |
0.0 |
| C24 |
C25 |
C37 |
C39 |
358.0 |
0.3 |
| C23 |
C24 |
C25 |
H24 |
180.0 |
180.0 |
| C25 |
C24 |
C23 |
C22 |
359.1 |
0.1 |
| C25 |
C24 |
C23 |
H23 |
179.1 |
179.9 |
| C27 |
C26 |
C25 |
C24 |
196.0 |
360.0 |
| H26 |
C26 |
C25 |
C24 |
15.9 |
180.1 |
| C28 |
C27 |
C26 |
H26 |
355.2 |
359.9 |
| H27 |
C27 |
C26 |
H26 |
175.2 |
180.0 |
| C33 |
C28 |
C27 |
H27 |
4.8 |
360.0 |
| C29 |
C28 |
C27 |
H27 |
181.2 |
179.7 |
| C34 |
C32 |
C33 |
H33 |
359.6 |
0.1 |
| C31 |
C32 |
C33 |
H33 |
179.0 |
180.0 |
| O35 |
C34 |
O36 |
HO36 |
0.0 |
0.0 |
| C29 |
C30 |
C31 |
H30 |
180.0 |
179.6 |
| C31 |
C30 |
C29 |
H29 |
180.8 |
180.0 |
| H31 |
C31 |
C30 |
C29 |
180.1 |
179.6 |
| H31 |
C31 |
C30 |
H30 |
0.1 |
0.0 |
| C29 |
C30 |
C31 |
H31 |
180.1 |
179.6 |
| C31 |
C30 |
C29 |
H30 |
180.0 |
180.4 |
| H30 |
C30 |
C31 |
H31 |
0.1 |
0.0 |
| C31 |
C30 |
H30 |
C29 |
180.0 |
179.6 |
| H30 |
C30 |
C29 |
H29 |
0.8 |
359.6 |
| H29 |
C29 |
C30 |
H30 |
0.8 |
359.6 |
| C25 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C22 |
C23 |
C24 |
H23 |
180.0 |
180.2 |
| C24 |
C23 |
C22 |
C39 |
360.0 |
359.7 |
| C24 |
C23 |
C22 |
O21 |
179.9 |
180.0 |
| C25 |
C24 |
H24 |
C23 |
180.0 |
180.0 |
| H24 |
C24 |
C23 |
C22 |
179.1 |
180.0 |
| H24 |
C24 |
C23 |
H23 |
359.1 |
359.9 |
| C37 |
C39 |
C22 |
C23 |
359.9 |
0.6 |
| C22 |
C23 |
C24 |
H24 |
179.1 |
180.0 |
| C24 |
C23 |
C22 |
H23 |
180.0 |
179.8 |
| C23 |
C22 |
C39 |
H39 |
179.9 |
180.3 |
| C39 |
C22 |
C23 |
O21 |
180.1 |
179.7 |
| C23 |
C22 |
O21 |
C20 |
3.9 |
180.0 |
| H23 |
C23 |
C24 |
H24 |
359.1 |
359.9 |
| C24 |
C23 |
H23 |
C22 |
180.0 |
180.2 |
| H23 |
C23 |
C22 |
C39 |
180.0 |
179.8 |
| H23 |
C23 |
C22 |
O21 |
359.9 |
0.1 |
| C37 |
C39 |
C22 |
H39 |
180.0 |
180.3 |
| C39 |
C22 |
C23 |
H23 |
180.0 |
179.8 |
| C23 |
C22 |
C39 |
O21 |
179.9 |
180.3 |
| C39 |
C22 |
O21 |
C20 |
183.8 |
0.3 |
| C37 |
C39 |
H39 |
C22 |
180.0 |
179.7 |
| H39 |
C39 |
C22 |
O21 |
360.0 |
360.0 |
| O21 |
C22 |
C23 |
H23 |
359.9 |
0.1 |
| C23 |
C22 |
O21 |
C39 |
180.1 |
179.7 |
| O21 |
C22 |
C39 |
H39 |
360.0 |
360.0 |
| C22 |
O21 |
C20 |
C19 |
184.0 |
180.0 |
| C22 |
O21 |
C20 |
H20 |
304.0 |
299.9 |
| C22 |
O21 |
C20 |
H20A |
63.6 |
59.9 |
| C19 |
C20 |
O21 |
H20 |
240.0 |
240.0 |
| C19 |
C20 |
O21 |
H20A |
120.4 |
120.0 |
| O21 |
C20 |
C19 |
C7 |
48.6 |
89.9 |
| H20 |
C20 |
O21 |
H20A |
240.4 |
240.0 |
| O21 |
C20 |
C19 |
H20 |
120.0 |
120.0 |
| O21 |
C20 |
C19 |
H20A |
239.6 |
239.9 |
| H20 |
C20 |
C19 |
H20A |
119.6 |
120.0 |
| C4 |
C19 |
C20 |
C7 |
180.7 |
180.3 |
| C20 |
C19 |
C7 |
C8 |
1.4 |
0.1 |
| C20 |
C19 |
C7 |
N6 |
179.9 |
180.0 |
| O21 |
C20 |
H20 |
C19 |
240.8 |
240.0 |
| O21 |
C20 |
H20 |
H20A |
120.4 |
120.0 |
| C19 |
C20 |
H20 |
H20A |
239.6 |
240.0 |
| H20 |
C20 |
C19 |
C7 |
288.6 |
330.0 |
| O21 |
C20 |
H20A |
C19 |
119.5 |
120.0 |
| O21 |
C20 |
H20A |
H20 |
239.8 |
240.0 |
| C19 |
C20 |
H20A |
H20 |
120.3 |
120.0 |
| H20A |
C20 |
C19 |
C7 |
169.0 |
210.0 |
| C4 |
C19 |
C20 |
H20 |
109.2 |
150.3 |
| C4 |
C19 |
C20 |
H20A |
349.6 |
30.3 |
| C20 |
C19 |
C4 |
C7 |
179.5 |
179.7 |
| C4 |
C19 |
C7 |
C8 |
180.8 |
179.8 |
| C4 |
C19 |
C7 |
N6 |
359.3 |
359.8 |
| C7 |
C19 |
C20 |
H20 |
288.6 |
330.0 |
| C7 |
C19 |
C20 |
H20A |
169.0 |
210.0 |
| N6 |
C7 |
C19 |
C8 |
178.5 |
180.0 |
| C19 |
C7 |
C8 |
S9 |
93.9 |
90.0 |
| C19 |
C7 |
C8 |
H8 |
213.8 |
210.0 |
| C19 |
C7 |
C8 |
H8A |
333.5 |
329.9 |
| C2 |
C4 |
C19 |
C7 |
179.2 |
180.3 |
| C2 |
C4 |
O5 |
N6 |
180.6 |
179.8 |
| O5 |
C4 |
C19 |
C7 |
0.9 |
0.2 |
| C1 |
C2 |
C4 |
O5 |
332.1 |
60.1 |
| C3 |
C2 |
C1 |
H2 |
119.3 |
240.0 |
| C1 |
C2 |
C3 |
H3 |
277.3 |
300.0 |
| C1 |
C2 |
C3 |
H3A |
37.2 |
60.0 |
| C1 |
C2 |
C3 |
H3B |
157.2 |
180.0 |
| C3 |
C2 |
C4 |
O5 |
95.9 |
300.1 |
| C1 |
C2 |
C3 |
H2 |
243.3 |
120.0 |
| H3 |
C3 |
C2 |
H3A |
240.0 |
240.0 |
| H3 |
C3 |
C2 |
H3B |
120.0 |
120.0 |
| H3A |
C3 |
C2 |
H3B |
240.0 |
240.0 |
| H2 |
C2 |
C4 |
O5 |
215.4 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
33.9 |
180.0 |
| H2 |
C2 |
C3 |
H3A |
153.9 |
300.0 |
| H2 |
C2 |
C3 |
H3B |
273.9 |
60.0 |
| H3 |
C3 |
C2 |
H2 |
33.9 |
180.0 |
| C2 |
C3 |
H3 |
H3A |
120.0 |
120.0 |
| C2 |
C3 |
H3 |
H3B |
240.0 |
240.0 |
| H3A |
C3 |
H3 |
H3B |
120.0 |
120.0 |
| H3A |
C3 |
C2 |
H2 |
153.9 |
300.0 |
| C2 |
C3 |
H3A |
H3 |
240.0 |
240.0 |
| C2 |
C3 |
H3A |
H3B |
120.0 |
120.0 |
| H3 |
C3 |
H3A |
H3B |
240.0 |
240.0 |
| H3B |
C3 |
C2 |
H2 |
273.9 |
60.0 |
| C2 |
C3 |
H3B |
H3 |
120.0 |
120.0 |
| C2 |
C3 |
H3B |
H3A |
240.0 |
240.0 |
| H3 |
C3 |
H3B |
H3A |
120.0 |
120.0 |
| H1 |
C1 |
C2 |
H2 |
167.1 |
300.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H2 |
287.1 |
60.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
H2 |
47.1 |
180.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C19 |
C7 |
C8 |
N6 |
178.3 |
180.0 |
| S9 |
C8 |
C7 |
H8 |
240.0 |
240.0 |
| S9 |
C8 |
C7 |
H8A |
120.3 |
120.1 |
| C7 |
C8 |
S9 |
O10 |
171.9 |
268.6 |
| C7 |
C8 |
S9 |
HS9 |
47.1 |
25.5 |
| H8 |
C8 |
C7 |
H8A |
240.3 |
240.1 |
| C19 |
C7 |
N6 |
C8 |
181.4 |
180.0 |
| C4 |
O5 |
N6 |
C7 |
0.4 |
0.0 |
| N6 |
C7 |
C8 |
S9 |
275.5 |
270.0 |
| N6 |
C7 |
C8 |
H8 |
35.5 |
30.0 |
| N6 |
C7 |
C8 |
H8A |
155.2 |
149.9 |
| O5 |
N6 |
C7 |
C8 |
178.8 |
180.1 |
| C7 |
C8 |
S9 |
H8 |
120.0 |
120.0 |
| C7 |
C8 |
S9 |
H8A |
239.7 |
239.9 |
| H8 |
C8 |
S9 |
H8A |
119.7 |
120.0 |
| C11 |
S9 |
C8 |
HS9 |
234.0 |
240.0 |
| C8 |
S9 |
O10 |
HO10 |
213.3 |
354.8 |
| O10 |
S9 |
C8 |
HS9 |
124.8 |
243.2 |
| C7 |
C8 |
H8 |
S9 |
240.6 |
240.0 |
| C7 |
C8 |
H8 |
H8A |
120.3 |
120.0 |
| S9 |
C8 |
H8 |
H8A |
239.7 |
240.0 |
| H8 |
C8 |
S9 |
O10 |
51.9 |
148.7 |
| H8 |
C8 |
S9 |
HS9 |
287.1 |
265.5 |
| C7 |
C8 |
H8A |
S9 |
119.6 |
120.1 |
| C7 |
C8 |
H8A |
H8 |
239.8 |
240.1 |
| S9 |
C8 |
H8A |
H8 |
120.2 |
120.0 |
| H8A |
C8 |
S9 |
O10 |
292.2 |
28.7 |
| H8A |
C8 |
S9 |
HS9 |
167.4 |
145.5 |
| C11 |
S9 |
C8 |
H8 |
161.0 |
145.5 |
| C11 |
S9 |
C8 |
H8A |
41.3 |
25.5 |
| C8 |
S9 |
C11 |
HS9 |
124.6 |
90.0 |
| C11 |
S9 |
O10 |
HO10 |
104.6 |
358.0 |
| O10 |
S9 |
C11 |
HS9 |
235.7 |
270.0 |
| O10 |
S9 |
C8 |
H8 |
51.9 |
148.7 |
| O10 |
S9 |
C8 |
H8A |
292.2 |
28.7 |
| C8 |
S9 |
O10 |
HS9 |
234.8 |
116.8 |
| C11 |
S9 |
O10 |
HS9 |
126.2 |
120.0 |
| HO10 |
O10 |
S9 |
HS9 |
338.4 |
238.0 |
| C17 |
C11 |
S9 |
HS9 |
163.3 |
32.9 |
| C12 |
C11 |
S9 |
HS9 |
343.7 |
212.7 |
| C14 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
| C12 |
C14 |
C15 |
H14 |
180.0 |
179.8 |
| C15 |
C14 |
C12 |
CL13 |
179.8 |
180.0 |
| H15 |
C15 |
C16 |
H16 |
359.9 |
0.1 |
| H15 |
C15 |
C14 |
C12 |
180.3 |
179.7 |
| H15 |
C15 |
C14 |
H14 |
0.3 |
359.9 |
| C12 |
C14 |
C15 |
H15 |
180.3 |
179.7 |
| C15 |
C14 |
C12 |
H14 |
180.0 |
180.2 |
| H14 |
C14 |
C15 |
H15 |
0.3 |
359.9 |
| C15 |
C14 |
H14 |
C12 |
180.0 |
179.8 |
| H14 |
C14 |
C12 |
CL13 |
359.8 |
359.8 |
| CL13 |
C12 |
C14 |
H14 |
359.8 |
359.8 |
| HS9 |
S9 |
C8 |
H8 |
287.1 |
265.5 |
| HS9 |
S9 |
C8 |
H8A |
167.4 |
145.5 |
| C8 |
S9 |
HS9 |
O10 |
121.3 |
180.0 |
| HS9 |
S9 |
O10 |
HO10 |
338.4 |
238.0 |