Atom Nomenclature for 6ZZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6ZZ

Atom Name (V3) Atom Name (V2)
C2 C1
C4 C2
C5 C3
C6 C4
C20 C5
N N1
C9 C6
C18 C7
C19 C8
C8 C9
C16 C10
C10 C11
C24 C12
C25 C13
C23 C14
C26 C15
C28 C16
C32 C17
C29 C18
C31 C19
C22 C20
C13 C21
C14 C22
C C23
N1 N2
N3 N3
N7 N4
N27 N5
N15 N6
N11 N7
N30 N8
O12 O1
H35 H1
H33 H2
H34 H3
H36 H4
H38 H5
H37 H6
H39 H7
H40 H8
H42 H9
H41 H10
H43 H11
H44 H12
H45 H13
H46 H14
H48 H15
H47 H16
H49 H17
H50 H18
H51 H19
H52 H20
H53 H21
H55 H22
H56 H23
H54 H24
H57 H25
H58 H26
H59 H27
H60 H28
H61 H29
H62 H31