Atom Nomenclature for 6ZV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6ZV

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
N2 N1
C10 C7
C C8
C17 C9
C21 C10
C12 C11
C16 C12
C11 C13
C19 C14
C18 C15
C20 C16
C8 C17
C23 C18
C31 C19
C35 C20
C32 C21
C34 C22
C25 C23
C27 C24
C28 C25
C14 C26
C26 C27
N N2
N1 N3
N24 N4
N3 N5
N22 N6
N30 N7
N7 N8
F29 F1
F15 F2
H69 H1
H77 H2
H78 H3
H79 H4
H76 H5
H42 H6
H41 H8
H68 H9
H39 H10
H40 H11
H38 H12
H44 H13
H43 H14
H65 H15
H66 H16
H71 H17
H72 H18
H74 H19
H73 H20
H51 H21
H52 H22
H53 H23
H57 H24
H58 H25
H59 H26
H62 H27
H60 H28
H61 H29
H63 H30
H64 H31
H67 H32
H70 H34