Atom Nomenclature for 6ZA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6ZA

Atom Name (V3) Atom Name (V2)
N12 N1
C15 C1
C17 C2
C20 C3
C21 C4
C22 C5
S01 S1
P02 P1
O03 O1
O04 O2
O05 O3
O06 O4
O07 O5
O08 O6
N09 N2
N10 N3
N11 N4
N13 N5
C14 C6
C16 C7
C18 C8
C19 C9
C23 C10
H151 H1
H171 H3
H201 H4
H061 H6
H071 H7
H101 H8
H131 H9
H132 H10
H141 H11
H161 H13
H181 H14
H182 H15