Atom Nomenclature for 6Z0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6Z0

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C4 C4
N5 N5
C6 C6
N9 N9
C15 C15
C1 C1
C7 C7
O8 O8
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C16 C16
C17 C17
F18 F18
C20 C20
O22 O22
C23 C23
N28 N28
C25 C25
C60 C60
F26 F26
F27 F27
C5 C5
N24 N24
H2 H2
H3 H3
H6 H6
H9 H9
H14 H14
H13 H13
H17 H17
H201 H201
H202 H202
H203 H203
H601 H601
H602 H602
H24 H24
H28 H28