PDB Chemical Component 6YN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6YN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C9	N3	1.344	1.335
C9	C5	1.345	1.378
N3	C8	1.333	1.317
C5	C6	1.388	1.409
C5	N2	1.375	1.389
C6	C7	1.397	1.358
C17	N5	1.326	1.320
C17	C13	1.389	1.386
N5	C16	1.326	1.319
C8	N2	1.367	1.350
C8	N4	1.334	1.390
N2	N1	1.242	1.398
C7	C4	1.401	1.415
N4	C13	1.328	1.400
C13	C14	1.396	1.400
C16	C15	1.390	1.381
N1	C4	1.333	1.312
C4	C3	1.414	1.483
F2	C10	1.340	1.351
C14	C15	1.390	1.392
C14	N6	1.410	1.394
C3	C10	1.394	1.396
C3	C12	1.401	1.395
C10	C1	1.394	1.383
N6	C18	1.496	1.469
N6	C22	1.479	1.469
F1	C12	1.345	1.351
C12	C11	1.393	1.382
C18	C19	1.529	1.531
C22	C21	1.529	1.531
C1	C2	1.393	1.382
C19	C20	1.525	1.531
C11	C2	1.394	1.383
C21	C20	1.548	1.531
C21	N7	1.471	1.469
C11	H1	1.080	1.080
C2	H2	1.080	1.080
C1	H3	1.080	1.080
C7	H4	1.080	1.080
C6	H5	1.080	1.081
C9	H6	1.080	1.080
N4	H7	1.000	0.970
C17	H8	1.079	1.081
C16	H9	1.080	1.079
C15	H10	1.081	1.080
C22	H11	1.100	1.090
C22	H12	1.100	1.090
C18	H13	1.100	1.090
C18	H14	1.100	1.090
C19	H15	1.100	1.090
C19	H16	1.100	1.090
C20	H17	1.100	1.090
C20	H18	1.100	1.090
C21	H19	1.100	1.089
N7	H20	1.000	1.009
N7	H21	1.000	1.009

Bond Angles for 6YN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C9	N3	C8	106.9	109.9
N3	C9	H6	125.1	126.3
N3	C8	N4	132.7	125.4
C5	C6	H5	121.3	120.5
C6	C7	H4	119.7	119.9
C17	N5	C16	121.9	121.9
N5	C17	H8	119.8	119.6
C17	C13	C14	118.9	118.9
N5	C16	C15	121.3	121.0
N5	C16	H9	119.4	119.5
C8	N4	C13	129.2	120.0
C8	N4	H7	115.4	120.0
N4	C13	C14	118.7	120.6
C13	N4	H7	115.4	120.0
C13	C14	C15	119.3	118.3
C13	C14	N6	122.4	120.9
C15	C16	H9	119.4	119.5
C16	C15	H10	120.9	120.4
C14	C15	H10	120.9	120.4
C14	N6	C18	117.4	111.0
C14	N6	C22	120.9	111.0
C10	C1	H3	119.8	119.9
C22	N6	C18	120.9	111.2
N6	C18	C19	112.9	109.5
N6	C18	H13	108.6	109.4
N6	C18	H14	108.6	109.4
N6	C22	C21	112.7	109.5
N6	C22	H11	108.6	109.5
N6	C22	H12	108.7	109.5
F1	C12	C11	118.5	120.1
C12	C11	C2	120.0	120.1
C12	C11	H1	120.0	120.0
C18	C19	C20	110.8	109.3
C19	C18	H13	108.6	109.5
C19	C18	H14	108.6	109.5
C18	C19	H15	109.1	109.4
C18	C19	H16	109.1	109.5
C22	C21	C20	109.2	109.3
C22	C21	N7	109.9	109.5
C21	C22	H11	108.7	109.4
C21	C22	H12	108.6	109.5
C22	C21	H19	108.9	109.5
C1	C2	H2	120.4	119.9
C20	C19	H15	109.1	109.5
C20	C19	H16	109.1	109.5
C19	C20	H17	109.6	109.5
C19	C20	H18	109.5	109.5
C2	C11	H1	120.0	119.9
C11	C2	H2	120.5	119.8
C21	C20	H17	109.6	109.5
C21	C20	H18	109.6	109.6
N7	C21	H19	109.7	109.5
C21	N7	H20	109.5	111.0
C21	N7	H21	109.4	111.0
H11	C22	H12	109.4	109.5
H13	C18	H14	109.5	109.5
H15	C19	H16	109.5	109.6
H17	C20	H18	109.5	109.6
H20	N7	H21	109.5	110.9

Torsion Angles for 6YN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C9	N3	C8	N4	180.9	180.0
C9	C5	C6	H5	359.3	359.9
C8	N3	C9	H6	180.7	180.0
N3	C8	N4	C13	346.3	355.9
N3	C8	N4	H7	166.3	175.9
C5	C6	C7	H4	180.7	180.0
N2	C5	C6	H5	179.3	179.8
N5	C17	C13	C14	0.2	0.2
C17	N5	C16	C15	0.0	0.0
C17	N5	C16	H9	180.0	180.0
N4	C13	C17	C14	179.4	179.8
C17	C13	N4	H7	198.5	173.3
C17	C13	C14	C15	0.4	359.5
C17	C13	C14	N6	177.7	179.7
C16	N5	C17	H8	179.6	180.0
C15	C16	N5	H9	180.0	180.1
N5	C16	C15	H10	180.5	180.0
C8	N4	C13	C14	197.8	173.2
C13	N4	C8	H7	180.0	180.0
C17	C13	N4	C14	180.6	180.2
C8	N4	C13	H7	180.0	180.0
N4	C13	C14	C15	181.0	179.7
N4	C13	C14	N6	358.3	359.9
C14	C13	N4	H7	17.8	353.1
C13	C14	C15	H10	179.3	180.2
C13	C14	N6	C18	297.2	244.0
C13	C14	N6	C22	127.8	119.8
N5	C16	C15	H9	180.0	179.9
C13	C14	C15	C16	359.3	0.6
C14	C15	C16	H10	180.0	179.7
F2	C10	C1	H3	0.2	359.9
C13	C14	C15	N6	177.4	180.2
C14	C15	C16	H9	180.6	179.7
C16	C15	C14	H10	180.0	180.3
C13	C14	N6	C15	182.7	179.8
N6	C14	C15	H10	1.9	0.0
C22	N6	C14	C18	190.6	235.8
C14	N6	C18	C19	155.2	174.2
C14	N6	C18	H13	275.7	294.1
C14	N6	C18	H14	34.8	54.2
C14	N6	C22	C21	206.7	185.9
C14	N6	C22	H11	327.3	305.8
C14	N6	C22	H12	86.3	65.8
C3	C10	C1	H3	180.4	179.8
C3	C12	C11	H1	180.5	180.3
C10	C1	C2	H2	179.5	180.0
C14	N6	C18	C22	190.6	235.9
C18	N6	C22	C21	37.7	61.8
C18	N6	C22	H11	158.3	181.7
C18	N6	C22	H12	277.3	301.7
N6	C18	C19	C20	46.2	59.2
C19	C18	N6	H13	239.5	240.0
C19	C18	N6	H14	120.5	120.0
N6	C18	C19	H15	166.4	179.1
N6	C18	C19	H16	286.0	299.2
H13	C18	N6	H14	241.0	240.0
C14	N6	C22	C18	169.0	124.1
C22	N6	C18	C19	324.6	298.3
C22	N6	C18	H13	85.1	58.2
C22	N6	C18	H14	204.1	178.3
N6	C22	C21	C20	310.0	300.8
N6	C22	C21	N7	188.9	180.9
C21	C22	N6	H11	239.5	240.1
C21	C22	N6	H12	120.5	120.0
N6	C22	C21	H19	68.6	60.8
H11	C22	N6	H12	241.0	240.0
F1	C12	C11	C2	180.3	179.9
F1	C12	C11	H1	0.4	360.0
C2	C11	C12	H1	180.0	179.9
C12	C11	C2	H2	180.1	179.9
N6	C18	C19	H13	120.5	120.0
N6	C18	C19	H14	239.5	240.0
C20	C19	C18	H15	239.8	240.1
C20	C19	C18	H16	120.2	120.0
C18	C19	C20	H17	58.3	62.2
C18	C19	C20	H18	178.4	182.3
H13	C18	C19	H14	119.0	120.1
H15	C19	C18	H16	240.4	239.9
C21	C22	N6	C18	37.7	61.8
N6	C22	C21	H11	120.5	120.0
N6	C22	C21	H12	239.5	240.0
C22	C21	C20	H17	303.4	297.8
C22	C21	C20	H18	183.3	177.6
N7	C21	C22	H19	120.2	120.1
C22	C21	N7	H20	180.0	180.0
C22	C21	N7	H21	300.0	303.9
H11	C22	C21	H12	119.0	120.0
C1	C2	C11	H1	180.0	180.0
C11	C2	C1	H2	180.0	179.9
C20	C19	C18	H13	285.7	299.2
C20	C19	C18	H14	166.7	179.2
C18	C19	C20	H15	120.2	119.9
C18	C19	C20	H16	239.8	240.0
C22	C21	C20	C19	63.3	57.7
C21	C20	C19	H17	240.0	240.1
C21	C20	C19	H18	119.9	120.0
H15	C19	C20	H16	119.6	120.1
H17	C20	C19	H18	239.9	239.8
C12	C11	C2	H1	180.0	180.1
C1	C2	C11	H2	180.0	180.1
C22	C21	C20	N7	239.1	240.1
C20	C21	C22	H11	189.5	180.8
C20	C21	C22	H12	70.5	60.8
C22	C21	C20	H19	118.7	120.0
C21	C20	C19	H15	178.2	182.4
C21	C20	C19	H16	58.6	62.3
C19	C20	C21	H17	120.0	119.8
C19	C20	C21	H18	240.1	240.0
H17	C20	C21	H18	120.1	120.2
C22	C21	N7	C20	120.5	119.8
N7	C21	C22	H11	68.4	60.9
N7	C21	C22	H12	309.4	300.9
C22	C21	N7	H19	240.3	239.9
N7	C21	C20	H17	64.3	57.7
N7	C21	C20	H18	304.2	297.5
H20	N7	C21	H21	240.0	236.1
C12	C11	H1	C2	180.0	179.9
H1	C11	C2	H2	0.0	359.9
H2	C2	C11	H1	0.0	359.9
H3	C1	C2	H2	359.5	0.1
H5	C6	C7	H4	0.7	0.0
H6	C9	N3	C8	180.7	180.0
C8	N4	H7	C13	180.0	180.0
H7	N4	C13	C14	17.8	353.1
H8	C17	N5	C16	179.6	180.0
H8	C17	C13	C14	180.2	180.2
N5	C16	H9	C15	180.0	180.1
H9	C16	C15	H10	0.5	0.1
H10	C15	C16	H9	0.5	0.1
H11	C22	N6	C18	158.3	181.7
N6	C22	H11	C21	237.0	240.0
N6	C22	H11	H12	118.5	120.0
H11	C22	C21	C20	189.5	180.8
H11	C22	C21	N7	68.4	60.9
C21	C22	H11	H12	241.5	240.0
H11	C22	C21	H19	308.1	300.8
H12	C22	N6	C18	277.3	301.7
N6	C22	H12	C21	123.0	120.1
N6	C22	H12	H11	241.5	240.0
H12	C22	C21	C20	70.5	60.8
H12	C22	C21	N7	309.4	300.9
C21	C22	H12	H11	118.5	119.9
H12	C22	C21	H19	189.1	180.8
N6	C18	H13	C19	236.9	240.0
N6	C18	H13	H14	118.4	120.0
H13	C18	C19	C20	285.7	299.2
C19	C18	H13	H14	241.5	240.0
H13	C18	C19	H15	45.9	59.1
H13	C18	C19	H16	165.5	179.3
N6	C18	H14	C19	123.1	120.0
N6	C18	H14	H13	241.6	240.0
H14	C18	C19	C20	166.7	179.2
C19	C18	H14	H13	118.4	120.0
H14	C18	C19	H15	286.8	299.1
H14	C18	C19	H16	46.4	59.2
C18	C19	H15	C20	238.8	240.2
H15	C19	C18	H13	45.9	59.1
H15	C19	C18	H14	286.8	299.1
C18	C19	H15	H16	119.4	120.1
C20	C19	H15	H16	240.6	239.9
H15	C19	C20	H17	298.1	302.3
H15	C19	C20	H18	58.2	62.5
C18	C19	H16	C20	121.3	119.8
H16	C19	C18	H13	165.5	179.3
H16	C19	C18	H14	46.4	59.2
C18	C19	H16	H15	240.6	239.9
C20	C19	H16	H15	119.4	120.1
H16	C19	C20	H17	178.5	182.2
H16	C19	C20	H18	298.6	302.3
H17	C20	C19	H15	298.1	302.3
H17	C20	C19	H16	178.5	182.2
C19	C20	H17	H18	120.2	120.1
C21	C20	H17	H18	239.8	239.8
H18	C20	C19	H15	58.2	62.5
H18	C20	C19	H16	298.6	302.3
C19	C20	H18	H17	239.8	239.9
C21	C20	H18	H17	120.2	120.2
C22	C21	H19	C20	241.1	240.2
C22	C21	H19	N7	120.4	120.1
H19	C21	C22	H11	308.1	300.8
H19	C21	C22	H12	189.1	180.8
H19	C21	C20	H17	184.7	177.8
H19	C21	C20	H18	64.6	57.6
H19	C21	N7	H20	299.7	300.1
H19	C21	N7	H21	59.8	64.0
H20	N7	C21	H19	299.7	300.1
C21	N7	H20	H21	120.0	123.9
H21	N7	C21	H19	59.8	64.0
C21	N7	H21	H20	240.0	236.1