Atom Nomenclature for 6XC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6XC

Atom Name (V3) Atom Name (V2)
C01 C01
C05 C05
C06 C06
C08 C08
C09 C09
C11 C11
N13 N13
C14 C14
N15 N15
C17 C17
C19 C19
C22 C22
N25 N25
C27 C27
C30 C30
C33 C33
N34 N34
C36 C36
O37 O37
H011 H011
H012 H012
H013 H013
H06 H06
H09 H09
H11 H11
H15 H15
H17 H17
H191 H191
H192 H192
H301 H301
H302 H302
H221 H221
H222 H222
H25 H25
H271 H271
H272 H272
H34 H34