PDB Chemical Component 6VA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6VA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C17 |
C18 |
1.389 |
1.382 |
C17 |
C16 |
1.371 |
1.382 |
C18 |
C19 |
1.387 |
1.382 |
C16 |
C15 |
1.390 |
1.383 |
C19 |
C20 |
1.389 |
1.382 |
C15 |
C20 |
1.381 |
1.383 |
C15 |
C14 |
1.509 |
1.507 |
C14 |
CA |
1.535 |
1.530 |
CA |
N |
1.454 |
1.469 |
CA |
C |
1.537 |
1.530 |
O |
C |
1.408 |
1.429 |
C |
C22 |
1.546 |
1.531 |
C22 |
O6 |
1.430 |
1.429 |
C22 |
C24 |
1.522 |
1.530 |
C22 |
C23 |
1.534 |
1.530 |
N |
H |
1.000 |
1.008 |
N |
H2 |
1.000 |
1.009 |
C14 |
H4 |
1.100 |
1.089 |
C14 |
H5 |
1.100 |
1.089 |
C16 |
H6 |
1.080 |
1.080 |
C17 |
H7 |
1.080 |
1.080 |
C18 |
H8 |
1.080 |
1.080 |
C19 |
H9 |
1.080 |
1.081 |
C20 |
H10 |
1.080 |
1.080 |
C24 |
H11 |
1.100 |
1.090 |
C24 |
H12 |
1.100 |
1.090 |
C24 |
H13 |
1.100 |
1.090 |
CA |
HA |
1.100 |
1.090 |
C23 |
H15 |
1.100 |
1.089 |
C23 |
H16 |
1.100 |
1.090 |
C23 |
H17 |
1.100 |
1.090 |
C |
H18 |
1.099 |
1.090 |
O6 |
H19 |
0.950 |
0.967 |
O |
H20 |
0.950 |
0.967 |
Bond Angles for 6VA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C17 |
C18 |
C19 |
121.2 |
120.0 |
C18 |
C17 |
H7 |
121.1 |
120.0 |
C17 |
C18 |
H8 |
119.4 |
120.0 |
C17 |
C16 |
H6 |
118.6 |
120.0 |
C18 |
C19 |
C20 |
119.2 |
120.0 |
C19 |
C18 |
H8 |
119.4 |
120.0 |
C18 |
C19 |
H9 |
120.4 |
120.0 |
C16 |
C15 |
C20 |
118.2 |
120.0 |
C15 |
C20 |
C19 |
120.8 |
120.0 |
C20 |
C19 |
H9 |
120.4 |
120.0 |
C19 |
C20 |
H10 |
119.6 |
120.0 |
C15 |
C20 |
H10 |
119.6 |
120.0 |
C15 |
C14 |
CA |
118.2 |
109.5 |
C15 |
C14 |
H4 |
107.2 |
109.5 |
C15 |
C14 |
H5 |
107.2 |
109.5 |
C14 |
CA |
C |
111.3 |
109.5 |
CA |
C14 |
H4 |
107.2 |
109.4 |
CA |
C14 |
H5 |
107.2 |
109.5 |
C14 |
CA |
HA |
106.8 |
109.5 |
CA |
N |
H |
109.5 |
111.0 |
CA |
N |
H2 |
109.5 |
111.0 |
C |
CA |
HA |
106.8 |
109.5 |
CA |
C |
H18 |
107.8 |
109.5 |
O |
C |
H18 |
109.5 |
109.5 |
C |
C22 |
O6 |
107.5 |
109.4 |
C24 |
C22 |
O6 |
106.6 |
109.5 |
C23 |
C22 |
O6 |
106.1 |
109.5 |
C22 |
O6 |
H19 |
109.5 |
114.0 |
C24 |
C22 |
C23 |
108.0 |
109.5 |
C22 |
C24 |
H11 |
109.5 |
109.5 |
C22 |
C24 |
H12 |
109.5 |
109.5 |
C22 |
C24 |
H13 |
109.5 |
109.5 |
C22 |
C23 |
H15 |
109.5 |
109.5 |
C22 |
C23 |
H16 |
109.4 |
109.5 |
C22 |
C23 |
H17 |
109.5 |
109.4 |
H |
N |
H2 |
109.4 |
111.0 |
H4 |
C14 |
H5 |
109.5 |
109.5 |
H11 |
C24 |
H12 |
109.5 |
109.4 |
H11 |
C24 |
H13 |
109.5 |
109.4 |
H12 |
C24 |
H13 |
109.4 |
109.5 |
H15 |
C23 |
H16 |
109.5 |
109.5 |
H15 |
C23 |
H17 |
109.5 |
109.5 |
H16 |
C23 |
H17 |
109.5 |
109.4 |
Torsion Angles for 6VA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C18 |
C17 |
C16 |
H6 |
176.1 |
180.0 |
C17 |
C18 |
C19 |
C20 |
0.6 |
0.1 |
C19 |
C18 |
C17 |
H8 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
H9 |
180.6 |
180.0 |
C17 |
C16 |
C15 |
C20 |
3.0 |
0.0 |
C19 |
C18 |
C17 |
H7 |
182.1 |
180.0 |
C17 |
C18 |
C19 |
H8 |
180.0 |
180.0 |
C15 |
C20 |
C19 |
C18 |
358.4 |
359.9 |
C20 |
C19 |
C18 |
H9 |
180.0 |
180.1 |
C18 |
C19 |
C20 |
H10 |
178.4 |
180.3 |
C16 |
C15 |
C20 |
C19 |
359.8 |
0.0 |
C16 |
C15 |
C20 |
H10 |
179.8 |
179.7 |
C16 |
C15 |
C14 |
CA |
159.7 |
270.3 |
C16 |
C15 |
C14 |
H4 |
280.9 |
30.3 |
C16 |
C15 |
C14 |
H5 |
38.4 |
150.3 |
C20 |
C19 |
C18 |
H8 |
180.6 |
180.1 |
C18 |
C19 |
C20 |
H9 |
180.0 |
179.9 |
C15 |
C20 |
C19 |
H10 |
180.0 |
179.7 |
C18 |
C19 |
C20 |
C15 |
358.4 |
359.9 |
C15 |
C20 |
C19 |
H9 |
178.4 |
180.0 |
C19 |
C20 |
C15 |
H10 |
180.0 |
180.3 |
C20 |
C15 |
C14 |
CA |
339.2 |
90.0 |
C20 |
C15 |
C14 |
H4 |
100.4 |
210.0 |
C20 |
C15 |
C14 |
H5 |
217.9 |
330.0 |
C15 |
C14 |
CA |
C |
164.6 |
175.0 |
CA |
C14 |
C15 |
H4 |
238.8 |
240.0 |
CA |
C14 |
C15 |
H5 |
121.2 |
120.0 |
C15 |
C14 |
CA |
HA |
48.3 |
55.0 |
H4 |
C14 |
C15 |
H5 |
242.5 |
239.9 |
C15 |
C14 |
CA |
H4 |
121.2 |
120.0 |
C15 |
C14 |
CA |
H5 |
238.8 |
240.0 |
C14 |
CA |
N |
H |
180.0 |
300.0 |
C14 |
CA |
N |
H2 |
300.0 |
64.0 |
C |
CA |
C14 |
HA |
116.3 |
120.0 |
C14 |
CA |
C |
H18 |
307.4 |
300.0 |
H4 |
C14 |
CA |
H5 |
117.5 |
120.0 |
H |
N |
CA |
H2 |
240.0 |
236.1 |
C |
CA |
C14 |
H4 |
43.3 |
55.0 |
C |
CA |
C14 |
H5 |
285.8 |
295.0 |
C14 |
CA |
C |
HA |
243.7 |
240.0 |
C |
CA |
N |
H |
305.7 |
60.1 |
C |
CA |
N |
H2 |
65.6 |
184.0 |
O |
C |
CA |
H18 |
116.2 |
120.0 |
CA |
C |
C22 |
O6 |
294.1 |
297.8 |
O |
C |
CA |
HA |
179.9 |
180.1 |
CA |
C |
O |
H18 |
245.0 |
240.0 |
C14 |
CA |
C |
C22 |
185.9 |
180.1 |
C24 |
C22 |
C |
O6 |
117.9 |
120.0 |
C23 |
C22 |
C |
O6 |
242.5 |
240.0 |
C |
C22 |
O6 |
H19 |
180.0 |
180.0 |
C |
C22 |
C24 |
H11 |
180.0 |
300.0 |
C |
C22 |
C24 |
H12 |
300.0 |
60.0 |
C |
C22 |
C24 |
H13 |
60.0 |
180.0 |
C |
C22 |
C23 |
H15 |
180.0 |
185.1 |
C |
C22 |
C23 |
H16 |
300.0 |
305.1 |
C |
C22 |
C23 |
H17 |
60.0 |
65.1 |
C24 |
C22 |
O6 |
C23 |
114.9 |
120.0 |
O6 |
C22 |
C24 |
H11 |
298.4 |
60.0 |
O6 |
C22 |
C24 |
H12 |
58.4 |
179.9 |
O6 |
C22 |
C24 |
H13 |
178.4 |
300.0 |
O6 |
C22 |
C23 |
H15 |
61.7 |
65.1 |
O6 |
C22 |
C23 |
H16 |
181.7 |
185.2 |
O6 |
C22 |
C23 |
H17 |
301.7 |
305.1 |
C |
C22 |
C24 |
O6 |
241.6 |
240.0 |
C23 |
C22 |
C24 |
O6 |
113.6 |
120.0 |
C24 |
C22 |
O6 |
H19 |
57.5 |
60.0 |
C24 |
C22 |
C23 |
H15 |
307.7 |
305.1 |
C24 |
C22 |
C23 |
H16 |
67.8 |
65.1 |
C24 |
C22 |
C23 |
H17 |
187.8 |
185.1 |
H11 |
C24 |
C22 |
H12 |
240.0 |
240.0 |
H11 |
C24 |
C22 |
H13 |
120.0 |
120.0 |
H12 |
C24 |
C22 |
H13 |
240.0 |
239.9 |
C |
C22 |
C23 |
O6 |
118.3 |
120.0 |
C24 |
C22 |
C23 |
O6 |
246.0 |
240.0 |
C23 |
C22 |
O6 |
H19 |
302.6 |
300.0 |
C23 |
C22 |
C24 |
H11 |
52.0 |
180.0 |
C23 |
C22 |
C24 |
H12 |
172.0 |
300.0 |
C23 |
C22 |
C24 |
H13 |
292.0 |
60.0 |
H15 |
C23 |
C22 |
H16 |
240.0 |
240.0 |
H15 |
C23 |
C22 |
H17 |
120.0 |
120.0 |
H16 |
C23 |
C22 |
H17 |
240.0 |
240.0 |
CA |
N |
H |
H2 |
120.0 |
123.9 |
CA |
N |
H2 |
H |
240.0 |
236.1 |
C15 |
C14 |
H4 |
CA |
232.1 |
240.0 |
C15 |
C14 |
H4 |
H5 |
116.0 |
120.0 |
H4 |
C14 |
CA |
C |
43.3 |
55.0 |
CA |
C14 |
H4 |
H5 |
244.0 |
240.0 |
H4 |
C14 |
CA |
HA |
287.1 |
294.9 |
C15 |
C14 |
H5 |
CA |
127.9 |
120.0 |
C15 |
C14 |
H5 |
H4 |
244.0 |
239.9 |
H5 |
C14 |
CA |
C |
285.8 |
295.0 |
CA |
C14 |
H5 |
H4 |
116.0 |
120.0 |
H5 |
C14 |
CA |
HA |
169.5 |
174.9 |
H6 |
C16 |
C15 |
C20 |
183.0 |
180.0 |
H7 |
C17 |
C18 |
C19 |
182.1 |
180.0 |
H7 |
C17 |
C18 |
H8 |
2.1 |
0.0 |
H7 |
C17 |
C16 |
H6 |
356.1 |
360.0 |
C17 |
C18 |
H8 |
C19 |
180.0 |
180.0 |
H8 |
C18 |
C17 |
H7 |
2.1 |
0.0 |
H8 |
C18 |
C19 |
C20 |
180.6 |
180.1 |
H8 |
C18 |
C19 |
H9 |
0.6 |
0.0 |
C18 |
C19 |
H9 |
C20 |
180.0 |
180.1 |
H9 |
C19 |
C18 |
H8 |
0.6 |
0.0 |
H9 |
C19 |
C20 |
H10 |
358.4 |
0.3 |
C15 |
C20 |
H10 |
C19 |
180.0 |
180.3 |
H10 |
C20 |
C19 |
H9 |
358.4 |
0.3 |
H11 |
C24 |
C22 |
O6 |
298.4 |
60.0 |
H11 |
C24 |
C22 |
C23 |
52.0 |
180.0 |
C22 |
C24 |
H11 |
H12 |
120.0 |
120.0 |
C22 |
C24 |
H11 |
H13 |
240.0 |
240.0 |
H12 |
C24 |
H11 |
H13 |
120.0 |
120.0 |
H12 |
C24 |
C22 |
O6 |
58.4 |
179.9 |
H12 |
C24 |
C22 |
C23 |
172.0 |
300.0 |
C22 |
C24 |
H12 |
H11 |
240.0 |
240.0 |
C22 |
C24 |
H12 |
H13 |
120.0 |
120.1 |
H11 |
C24 |
H12 |
H13 |
240.0 |
240.0 |
H13 |
C24 |
C22 |
O6 |
178.4 |
300.0 |
H13 |
C24 |
C22 |
C23 |
292.0 |
60.0 |
C22 |
C24 |
H13 |
H11 |
120.0 |
120.0 |
C22 |
C24 |
H13 |
H12 |
240.0 |
239.9 |
H11 |
C24 |
H13 |
H12 |
120.0 |
119.9 |
C14 |
CA |
HA |
C |
119.2 |
120.0 |
HA |
CA |
C14 |
H4 |
287.1 |
294.9 |
HA |
CA |
C14 |
H5 |
169.5 |
174.9 |
HA |
CA |
N |
H |
62.8 |
180.1 |
HA |
CA |
N |
H2 |
182.8 |
304.0 |
HA |
CA |
C |
H18 |
63.6 |
60.1 |
H15 |
C23 |
C22 |
O6 |
61.7 |
65.1 |
C22 |
C23 |
H15 |
H16 |
120.0 |
120.0 |
C22 |
C23 |
H15 |
H17 |
240.0 |
240.0 |
H16 |
C23 |
H15 |
H17 |
120.0 |
120.0 |
H16 |
C23 |
C22 |
O6 |
181.7 |
185.2 |
C22 |
C23 |
H16 |
H15 |
240.0 |
240.0 |
C22 |
C23 |
H16 |
H17 |
120.0 |
120.0 |
H15 |
C23 |
H16 |
H17 |
240.0 |
240.0 |
H17 |
C23 |
C22 |
O6 |
301.7 |
305.1 |
C22 |
C23 |
H17 |
H15 |
120.0 |
120.0 |
C22 |
C23 |
H17 |
H16 |
240.0 |
240.0 |
H15 |
C23 |
H17 |
H16 |
120.0 |
120.0 |
H18 |
C |
CA |
HA |
63.6 |
60.1 |
H18 |
C |
C22 |
O6 |
172.6 |
177.8 |
H20 |
O |
C |
H18 |
295.0 |
180.0 |