PDB Chemical Component 6V1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 6V1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C3 |
1.516 |
1.530 |
| C6 |
N3 |
1.477 |
1.464 |
| O8 |
C4 |
1.240 |
1.213 |
| C4 |
N3 |
1.339 |
1.339 |
| C4 |
C5 |
1.534 |
1.516 |
| N3 |
C2 |
1.357 |
1.338 |
| C5 |
C1 |
1.541 |
1.543 |
| C2 |
O7 |
1.221 |
1.212 |
| C2 |
C1 |
1.531 |
1.513 |
| C1 |
SG |
1.810 |
1.814 |
| SG |
CB |
1.759 |
1.814 |
| CB |
CA |
1.570 |
1.530 |
| CA |
C |
1.509 |
1.507 |
| CA |
N |
1.437 |
1.469 |
| C |
O |
1.189 |
1.208 |
| C |
O1 |
1.330 |
1.343 |
| N |
H1 |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
H4 |
1.100 |
1.089 |
| CB |
H5 |
1.100 |
1.090 |
| CB |
H6 |
1.100 |
1.089 |
| C1 |
H7 |
1.100 |
1.090 |
| C5 |
H8 |
1.100 |
1.090 |
| C5 |
H9 |
1.100 |
1.090 |
| C6 |
H10 |
1.100 |
1.090 |
| C6 |
H11 |
1.101 |
1.090 |
| C3 |
H12 |
1.100 |
1.090 |
| C3 |
H13 |
1.100 |
1.090 |
| C3 |
H14 |
1.100 |
1.090 |
| O1 |
H15 |
0.950 |
0.968 |
Bond Angles for 6V1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C6 |
H10 |
107.1 |
109.4 |
| C3 |
C6 |
H11 |
107.1 |
109.5 |
| C6 |
C3 |
H12 |
109.5 |
109.5 |
| C6 |
C3 |
H13 |
109.5 |
109.5 |
| C6 |
C3 |
H14 |
109.5 |
109.5 |
| C4 |
C5 |
H8 |
111.2 |
110.7 |
| C4 |
C5 |
H9 |
111.2 |
110.6 |
| N3 |
C2 |
O7 |
125.0 |
125.4 |
| C5 |
C1 |
H7 |
108.2 |
110.6 |
| C2 |
C1 |
H7 |
108.4 |
110.6 |
| SG |
CB |
H5 |
110.2 |
109.5 |
| SG |
CB |
H6 |
110.2 |
109.5 |
| CB |
CA |
H4 |
109.4 |
109.5 |
| CA |
C |
O |
118.5 |
120.0 |
| CA |
C |
O1 |
117.6 |
120.0 |
| C |
CA |
H4 |
110.2 |
109.5 |
| CA |
N |
H1 |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| O |
C |
O1 |
122.9 |
120.0 |
| C |
O1 |
H15 |
109.5 |
117.0 |
| H1 |
N |
H2 |
109.5 |
111.0 |
| H5 |
CB |
H6 |
109.5 |
109.5 |
| H8 |
C5 |
H9 |
109.4 |
110.7 |
| H10 |
C6 |
H11 |
109.5 |
109.5 |
| H12 |
C3 |
H13 |
109.5 |
109.4 |
| H12 |
C3 |
H14 |
109.5 |
109.5 |
| H13 |
C3 |
H14 |
109.5 |
109.5 |
Torsion Angles for 6V1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H10 |
C6 |
C3 |
H11 |
242.7 |
120.0 |
| H12 |
C3 |
C6 |
H13 |
240.0 |
240.0 |
| H12 |
C3 |
C6 |
H14 |
120.0 |
120.1 |
| H13 |
C3 |
C6 |
H14 |
240.0 |
240.0 |
| C6 |
N3 |
C2 |
O7 |
334.4 |
0.0 |
| O8 |
C4 |
C5 |
H8 |
293.9 |
61.6 |
| O8 |
C4 |
C5 |
H9 |
56.0 |
298.5 |
| C4 |
N3 |
C2 |
O7 |
157.1 |
180.0 |
| C4 |
C5 |
C1 |
H7 |
102.9 |
118.7 |
| H8 |
C5 |
C4 |
H9 |
237.8 |
123.0 |
| N3 |
C2 |
C1 |
H7 |
268.5 |
241.4 |
| C2 |
C1 |
C5 |
H7 |
246.2 |
241.4 |
| O7 |
C2 |
C1 |
H7 |
86.2 |
61.3 |
| C5 |
C1 |
C2 |
H7 |
113.7 |
118.6 |
| C1 |
SG |
CB |
H5 |
347.2 |
60.1 |
| C1 |
SG |
CB |
H6 |
108.1 |
300.0 |
| SG |
CB |
CA |
H4 |
76.0 |
60.1 |
| H5 |
CB |
SG |
H6 |
239.0 |
120.1 |
| CB |
CA |
C |
O1 |
284.1 |
280.0 |
| C |
CA |
CB |
H4 |
116.9 |
120.0 |
| CB |
CA |
N |
H1 |
180.0 |
176.0 |
| CB |
CA |
N |
H2 |
300.0 |
300.0 |
| CB |
CA |
C |
H4 |
243.7 |
240.0 |
| C |
CA |
N |
H1 |
293.9 |
296.0 |
| C |
CA |
N |
H2 |
53.9 |
60.0 |
| O |
C |
CA |
O1 |
168.9 |
180.0 |
| CA |
C |
O1 |
H15 |
168.4 |
180.0 |
| H1 |
N |
CA |
H2 |
240.0 |
236.0 |
| CA |
C |
O |
O1 |
191.7 |
180.0 |
| O |
C |
CA |
H4 |
209.3 |
220.0 |
| O |
C |
O1 |
H15 |
360.0 |
360.0 |
| CA |
C |
O1 |
O |
168.4 |
180.0 |
| O1 |
C |
CA |
H4 |
40.4 |
40.0 |
| CA |
N |
H1 |
H2 |
120.0 |
124.0 |
| CA |
N |
H2 |
H1 |
240.0 |
236.0 |
| H4 |
CA |
C |
O |
209.3 |
220.0 |
| H4 |
CA |
C |
O1 |
40.4 |
40.0 |
| H4 |
CA |
N |
H1 |
56.0 |
56.0 |
| H4 |
CA |
N |
H2 |
176.1 |
180.0 |
| SG |
CB |
H5 |
H6 |
121.4 |
239.9 |
| H5 |
CB |
CA |
H4 |
316.5 |
180.0 |
| SG |
CB |
H6 |
H5 |
238.6 |
120.0 |
| H6 |
CB |
CA |
H4 |
195.6 |
300.1 |
| C4 |
C5 |
H8 |
H9 |
123.2 |
237.0 |
| H8 |
C5 |
C1 |
H7 |
343.9 |
237.1 |
| C4 |
C5 |
H9 |
H8 |
236.8 |
123.0 |
| H9 |
C5 |
C1 |
H7 |
221.8 |
0.2 |
| C3 |
C6 |
H10 |
H11 |
115.7 |
240.0 |
| H10 |
C6 |
C3 |
H12 |
301.3 |
180.0 |
| H10 |
C6 |
C3 |
H13 |
61.3 |
300.0 |
| H10 |
C6 |
C3 |
H14 |
181.3 |
60.0 |
| C3 |
C6 |
H11 |
H10 |
244.2 |
120.0 |
| H11 |
C6 |
C3 |
H12 |
58.7 |
60.0 |
| H11 |
C6 |
C3 |
H13 |
178.6 |
180.0 |
| H11 |
C6 |
C3 |
H14 |
298.6 |
300.0 |
| H12 |
C3 |
C6 |
H10 |
301.3 |
180.0 |
| H12 |
C3 |
C6 |
H11 |
58.7 |
60.0 |
| C6 |
C3 |
H12 |
H13 |
120.0 |
120.0 |
| C6 |
C3 |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
C3 |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
C3 |
C6 |
H10 |
61.3 |
300.0 |
| H13 |
C3 |
C6 |
H11 |
178.6 |
180.0 |
| C6 |
C3 |
H13 |
H12 |
240.0 |
240.0 |
| C6 |
C3 |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
C3 |
H13 |
H14 |
240.0 |
240.0 |
| H14 |
C3 |
C6 |
H10 |
181.3 |
60.0 |
| H14 |
C3 |
C6 |
H11 |
298.6 |
300.0 |
| C6 |
C3 |
H14 |
H12 |
120.0 |
120.1 |
| C6 |
C3 |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
C3 |
H14 |
H13 |
120.0 |
120.0 |