Atom Nomenclature for 6TG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6TG

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
O8 O8
C9 C9
C10 C10
C11 C11
N12 N12
C13 C13
C14 C14
N15 N15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
N26 N26
C27 C27
N28 N28
C29 C29
H11C H11C
H12C H12C
H13C H13C
H3 H3
H5 H5
H101 H101
H102 H102
H103 H103
H91C H91C
H92C H92C
H93C H93C
H171 H171
H172 H172
H173 H173
H161 H161
H162 H162
H19 H19
H23 H23
H20 H20
H21 H21
H25 H25
H29 H29
H27 H27