Atom Nomenclature for 6SC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6SC

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
N03 N03
N04 N04
C05 C05
N06 N06
C07 C07
C08 C08
C09 C09
N10 N10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
BR24 BR24
H05 H05
H08 H08
HN10 HN10
H121 1H12
H122 2H12
H14 H14
H15 H15
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23