Atom Nomenclature for 6S3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 6S3

Atom Name (V3) Atom Name (V2)
CAT C1
CAU C2
NAV N1
CAY C3
CAW C4
CAX C5
NAS N2
CAP C6
CAO C7
CAN C8
CAQ C9
CAR C10
CAM C11
CAH C12
CAI C13
CAE C14
CAD C15
CLAK CL1
CAA C16
CAB C17
CAJ C18
OBA O1
NAZ N3
NAC N4
CAF C19
NAG N5
CAL C20
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23